Link

Type: Association

A typed association between two entities, supported by evidence

URI: biolink:Association

OBAN:association

rdf:Statement

owl:Axiom


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Children

Referenced by class

Attributes

Own

  • association type OPT
    • Description: connects an association to the type of association (e.g. gene to phenotype)
    • range: OntologyClass
  • association➞id REQ
    • Description: A unique identifier for an association
    • range: IdentifierType
    • in subsets: (translator_minimal)
  • negated OPT
    • Description: if set to true, then the association is negated i.e. is not true
    • range: Boolean
  • object REQ
    • Description: connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
    • range: NamedThing
  • provided by OPT
    • Description: connects an association to the agent (person, organization or group) that provided it
    • range: Provider
  • publications 0..*
    • Description: connects an association to publications supporting the association
    • range: Publication
  • qualifiers 0..*
    • Description: connects an association to qualifiers that modify or qualify the meaning of that association
    • range: OntologyClass
  • relation REQ
    • Description: the relationship type by which a subject is connected to an object in an association
    • range: Uriorcurie
  • subject REQ
    • Description: connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
    • range: NamedThing

Domain for slot:

  • association slot OPT
    • Description: any slot that relates an association to another entity
    • range: String
  • association type OPT
    • Description: connects an association to the type of association (e.g. gene to phenotype)
    • range: OntologyClass
  • association➞id REQ
    • Description: A unique identifier for an association
    • range: IdentifierType
    • in subsets: (translator_minimal)
  • change is catalyzed by 0..*
    • Description: hyperedge connecting an association between two causally connected entities (for example, two chemical entities, or a chemical entity in that changes location) and the gene product, gene, or complex that enables or catalyzes the change.
    • range: MacromolecularMachine
  • clinical modifier qualifier OPT
    • Description: Used to characterize and specify the phenotypic abnormalities defined in the Phenotypic abnormality subontology, with respect to severity, laterality, age of onset, and other aspects
    • range: ClinicalModifier
  • edge label REQ
    • Description: A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes.
    • range: LabelType
  • frequency qualifier OPT
    • Description: a qualifier used in a phenotypic association to state how frequent the phenotype is observed in the subject
    • range: FrequencyValue
  • has confidence level OPT
    • Description: connects an association to a qualitative term denoting the level of confidence
    • range: ConfidenceLevel
  • has evidence OPT
    • Description: connects an association to an instance of supporting evidence
    • range: EvidenceType
  • negated OPT
    • Description: if set to true, then the association is negated i.e. is not true
    • range: Boolean
  • object REQ
    • Description: connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
    • range: NamedThing
  • onset qualifier OPT
    • Description: a qualifier used in a phenotypic association to state when the phenotype appears is in the subject
    • range: Onset
  • provided by OPT
    • Description: connects an association to the agent (person, organization or group) that provided it
    • range: Provider
  • publications 0..*
    • Description: connects an association to publications supporting the association
    • range: Publication
  • qualifiers 0..*
    • Description: connects an association to qualifiers that modify or qualify the meaning of that association
    • range: OntologyClass
  • quantifier qualifier OPT
    • Description: A measurable quantity for the object of the association
    • range: OntologyClass
  • relation REQ
    • Description: the relationship type by which a subject is connected to an object in an association
    • range: Uriorcurie
  • sequence variant qualifier OPT
    • Description: a qualifier used in an association where the variant
    • range: SequenceVariant
  • severity qualifier OPT
    • Description: a qualifier used in a phenotypic association to state how severe the phenotype is in the subject
    • range: SeverityValue
  • sex qualifier OPT
    • Description: a qualifier used in a phenotypic association to state whether the association is specific to a particular sex.
    • range: BiologicalSex
  • stage qualifier OPT
    • Description: stage at which expression takes place
    • range: LifeStage
  • subject REQ
    • Description: connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
    • range: NamedThing

Other properties

     
Mappings:   OBAN:association
    rdf:Statement
    owl:Axiom
Comments:   This is roughly the model used by biolink and ontobio at the moment