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Class: NamedThing

Description: a databased entity or concept/class
classDiagram class NamedThing Entity <|-- NamedThing NamedThing <|-- Attribute NamedThing <|-- OrganismTaxon NamedThing <|-- Event NamedThing <|-- AdministrativeEntity NamedThing <|-- StudyResult NamedThing <|-- InformationContentEntity NamedThing <|-- EvidenceType NamedThing <|-- PhysicalEntity NamedThing <|-- Activity NamedThing <|-- Procedure NamedThing <|-- Phenomenon NamedThing <|-- Device NamedThing <|-- DiagnosticAid NamedThing <|-- PlanetaryEntity NamedThing <|-- BiologicalEntity NamedThing <|-- ChemicalEntity NamedThing <|-- AffinityMeasurement NamedThing <|-- ClinicalEntity NamedThing <|-- ExposureEvent NamedThing : broad_synonym NamedThing : category NamedThing : deprecated NamedThing : description NamedThing : equivalent_identifiers NamedThing : exact_synonym NamedThing : full_name NamedThing : has_attribute NamedThing --|> Attribute : has_attribute NamedThing : id NamedThing : information_content NamedThing : iri NamedThing : name NamedThing : narrow_synonym NamedThing : provided_by NamedThing : related_synonym NamedThing : synonym NamedThing : taxon NamedThing : type NamedThing : xref

Inheritance

Slots

Name Cardinality and Range Inheritance Examples
provided_by:
The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph.
*
String		 direct
xref:
A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references. 		*
Uriorcurie		 direct
full_name:
a long-form human readable name for a thing 		0..1
LabelType		 direct
synonym:
Alternate human-readable names for a thing 		*
LabelType		 direct
exact_synonym:
An alternate label for an entity that denotes exactly the same meaning as the primary label and is interchangeable with it in all contexts. 		*
LabelType		 direct
broad_synonym:
An alternate label for an entity whose meaning is broader (more general) than the primary label but is still useful as a lexical alternative. 		*
LabelType		 direct
narrow_synonym:
An alternate label for an entity whose meaning is narrower (more specific) than the primary label, for example naming a particular sub-type. 		*
LabelType		 direct
related_synonym:
An alternate label that is related to the primary label but is neither exactly synonymous nor cleanly broader or narrower; useful as a lexical pointer but not for strict equivalence. Corresponds to oboInOwl:hasRelatedSynonym. 		*
LabelType		 direct
equivalent_identifiers:
A set of identifiers that are considered equivalent to the primary identifier of the entity. This attribute is used to represent a collection of identifiers that are considered equivalent to the primary identifier of an entity. These equivalent identifiers may come from different databases, ontologies, or naming conventions, but they all refer to the same underlying concept or entity. This attribute is particularly useful in data integration and interoperability scenarios, where it is important to recognize and link different representations of the same entity across various sources. 		*
Uriorcurie		 direct
information_content:
Information content (IC) value for a term, primarily from Automats. 		0..1
Float		 direct
taxon:
A property that indicates the taxonomic classification of an entity. Values for this slot should be from the NCBITaxon ontology. 		0..1
Uriorcurie		 direct
id:
A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI 		1
String		 Entity
iri:
An IRI for an entity. This is determined by the id using expansion rules. 		0..1
IriType		 Entity
category:
Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing} 		1..*
Uriorcurie		 Entity
type:
An rdf:type property asserting that an entity is an instance of a particular class. In Biolink the value is typically used to indicate the most specific category of which the entity is an instance. 		*
String		 Entity
name:
A human-readable name for an attribute or entity. 		0..1
LabelType		 Entity
description:
a human-readable description of an entity 		0..1
NarrativeText		 Entity
has_attribute:
connects any entity to an attribute 		*
Attribute		 Entity
deprecated:
A boolean flag indicating that an entity is no longer considered current or valid. 		0..1
Boolean		 Entity

Usages

used by used in type used
PredicateMapping exact_match domain NamedThing
PredicateMapping exact_match range NamedThing
PredicateMapping narrow_match domain NamedThing
PredicateMapping narrow_match range NamedThing
PredicateMapping broad_match domain NamedThing
PredicateMapping broad_match range NamedThing
OntologyClass subsets domain NamedThing
Attribute has_qualitative_value range NamedThing
Attribute subsets domain NamedThing
Attribute provided_by domain NamedThing
Attribute xref domain NamedThing
Attribute full_name domain NamedThing
Attribute synonym domain NamedThing
Attribute exact_synonym domain NamedThing
Attribute broad_synonym domain NamedThing
Attribute narrow_synonym domain NamedThing
Attribute related_synonym domain NamedThing
Attribute taxon domain NamedThing
ChemicalRole has_qualitative_value range NamedThing
ChemicalRole subsets domain NamedThing
ChemicalRole provided_by domain NamedThing
ChemicalRole xref domain NamedThing
ChemicalRole full_name domain NamedThing
ChemicalRole synonym domain NamedThing
ChemicalRole exact_synonym domain NamedThing
ChemicalRole broad_synonym domain NamedThing
ChemicalRole narrow_synonym domain NamedThing
ChemicalRole related_synonym domain NamedThing
ChemicalRole taxon domain NamedThing
BiologicalSex has_qualitative_value range NamedThing
BiologicalSex subsets domain NamedThing
BiologicalSex provided_by domain NamedThing
BiologicalSex xref domain NamedThing
BiologicalSex full_name domain NamedThing
BiologicalSex synonym domain NamedThing
BiologicalSex exact_synonym domain NamedThing
BiologicalSex broad_synonym domain NamedThing
BiologicalSex narrow_synonym domain NamedThing
BiologicalSex related_synonym domain NamedThing
BiologicalSex taxon domain NamedThing
PhenotypicSex has_qualitative_value range NamedThing
PhenotypicSex subsets domain NamedThing
PhenotypicSex provided_by domain NamedThing
PhenotypicSex xref domain NamedThing
PhenotypicSex full_name domain NamedThing
PhenotypicSex synonym domain NamedThing
PhenotypicSex exact_synonym domain NamedThing
PhenotypicSex broad_synonym domain NamedThing
PhenotypicSex narrow_synonym domain NamedThing
PhenotypicSex related_synonym domain NamedThing
PhenotypicSex taxon domain NamedThing
GenotypicSex has_qualitative_value range NamedThing
GenotypicSex subsets domain NamedThing
GenotypicSex provided_by domain NamedThing
GenotypicSex xref domain NamedThing
GenotypicSex full_name domain NamedThing
GenotypicSex synonym domain NamedThing
GenotypicSex exact_synonym domain NamedThing
GenotypicSex broad_synonym domain NamedThing
GenotypicSex narrow_synonym domain NamedThing
GenotypicSex related_synonym domain NamedThing
GenotypicSex taxon domain NamedThing
SeverityValue has_qualitative_value range NamedThing
SeverityValue subsets domain NamedThing
SeverityValue provided_by domain NamedThing
SeverityValue xref domain NamedThing
SeverityValue full_name domain NamedThing
SeverityValue synonym domain NamedThing
SeverityValue exact_synonym domain NamedThing
SeverityValue broad_synonym domain NamedThing
SeverityValue narrow_synonym domain NamedThing
SeverityValue related_synonym domain NamedThing
SeverityValue taxon domain NamedThing
FrequencyQuantifier has_count domain NamedThing
FrequencyQuantifier has_total domain NamedThing
FrequencyQuantifier has_quotient domain NamedThing
FrequencyQuantifier has_percentage domain NamedThing
NamedThing provided_by domain NamedThing
NamedThing xref domain NamedThing
NamedThing full_name domain NamedThing
NamedThing synonym domain NamedThing
NamedThing exact_synonym domain NamedThing
NamedThing broad_synonym domain NamedThing
NamedThing narrow_synonym domain NamedThing
NamedThing related_synonym domain NamedThing
NamedThing taxon domain NamedThing
RelationshipType subsets domain NamedThing
TaxonomicRank subsets domain NamedThing
OrganismTaxon has_taxonomic_rank domain NamedThing
OrganismTaxon provided_by domain NamedThing
OrganismTaxon xref domain NamedThing
OrganismTaxon full_name domain NamedThing
OrganismTaxon synonym domain NamedThing
OrganismTaxon exact_synonym domain NamedThing
OrganismTaxon broad_synonym domain NamedThing
OrganismTaxon narrow_synonym domain NamedThing
OrganismTaxon related_synonym domain NamedThing
OrganismTaxon taxon domain NamedThing
Event provided_by domain NamedThing
Event xref domain NamedThing
Event full_name domain NamedThing
Event synonym domain NamedThing
Event exact_synonym domain NamedThing
Event broad_synonym domain NamedThing
Event narrow_synonym domain NamedThing
Event related_synonym domain NamedThing
Event taxon domain NamedThing
AdministrativeEntity provided_by domain NamedThing
AdministrativeEntity xref domain NamedThing
AdministrativeEntity full_name domain NamedThing
AdministrativeEntity synonym domain NamedThing
AdministrativeEntity exact_synonym domain NamedThing
AdministrativeEntity broad_synonym domain NamedThing
AdministrativeEntity narrow_synonym domain NamedThing
AdministrativeEntity related_synonym domain NamedThing
AdministrativeEntity taxon domain NamedThing
StudyResult provided_by domain NamedThing
StudyResult xref domain NamedThing
StudyResult full_name domain NamedThing
StudyResult synonym domain NamedThing
StudyResult exact_synonym domain NamedThing
StudyResult broad_synonym domain NamedThing
StudyResult narrow_synonym domain NamedThing
StudyResult related_synonym domain NamedThing
StudyResult taxon domain NamedThing
ConceptCountAnalysisResult provided_by domain NamedThing
ConceptCountAnalysisResult xref domain NamedThing
ConceptCountAnalysisResult full_name domain NamedThing
ConceptCountAnalysisResult synonym domain NamedThing
ConceptCountAnalysisResult exact_synonym domain NamedThing
ConceptCountAnalysisResult broad_synonym domain NamedThing
ConceptCountAnalysisResult narrow_synonym domain NamedThing
ConceptCountAnalysisResult related_synonym domain NamedThing
ConceptCountAnalysisResult taxon domain NamedThing
ObservedExpectedFrequencyAnalysisResult provided_by domain NamedThing
ObservedExpectedFrequencyAnalysisResult xref domain NamedThing
ObservedExpectedFrequencyAnalysisResult full_name domain NamedThing
ObservedExpectedFrequencyAnalysisResult synonym domain NamedThing
ObservedExpectedFrequencyAnalysisResult exact_synonym domain NamedThing
ObservedExpectedFrequencyAnalysisResult broad_synonym domain NamedThing
ObservedExpectedFrequencyAnalysisResult narrow_synonym domain NamedThing
ObservedExpectedFrequencyAnalysisResult related_synonym domain NamedThing
ObservedExpectedFrequencyAnalysisResult taxon domain NamedThing
RelativeFrequencyAnalysisResult provided_by domain NamedThing
RelativeFrequencyAnalysisResult xref domain NamedThing
RelativeFrequencyAnalysisResult full_name domain NamedThing
RelativeFrequencyAnalysisResult synonym domain NamedThing
RelativeFrequencyAnalysisResult exact_synonym domain NamedThing
RelativeFrequencyAnalysisResult broad_synonym domain NamedThing
RelativeFrequencyAnalysisResult narrow_synonym domain NamedThing
RelativeFrequencyAnalysisResult related_synonym domain NamedThing
RelativeFrequencyAnalysisResult taxon domain NamedThing
ChiSquaredAnalysisResult provided_by domain NamedThing
ChiSquaredAnalysisResult xref domain NamedThing
ChiSquaredAnalysisResult full_name domain NamedThing
ChiSquaredAnalysisResult synonym domain NamedThing
ChiSquaredAnalysisResult exact_synonym domain NamedThing
ChiSquaredAnalysisResult broad_synonym domain NamedThing
ChiSquaredAnalysisResult narrow_synonym domain NamedThing
ChiSquaredAnalysisResult related_synonym domain NamedThing
ChiSquaredAnalysisResult taxon domain NamedThing
LogOddsAnalysisResult provided_by domain NamedThing
LogOddsAnalysisResult xref domain NamedThing
LogOddsAnalysisResult full_name domain NamedThing
LogOddsAnalysisResult synonym domain NamedThing
LogOddsAnalysisResult exact_synonym domain NamedThing
LogOddsAnalysisResult broad_synonym domain NamedThing
LogOddsAnalysisResult narrow_synonym domain NamedThing
LogOddsAnalysisResult related_synonym domain NamedThing
LogOddsAnalysisResult taxon domain NamedThing
TextMiningStudyResult provided_by domain NamedThing
TextMiningStudyResult xref domain NamedThing
TextMiningStudyResult full_name domain NamedThing
TextMiningStudyResult synonym domain NamedThing
TextMiningStudyResult exact_synonym domain NamedThing
TextMiningStudyResult broad_synonym domain NamedThing
TextMiningStudyResult narrow_synonym domain NamedThing
TextMiningStudyResult related_synonym domain NamedThing
TextMiningStudyResult taxon domain NamedThing
IceesStudyResult provided_by domain NamedThing
IceesStudyResult xref domain NamedThing
IceesStudyResult full_name domain NamedThing
IceesStudyResult synonym domain NamedThing
IceesStudyResult exact_synonym domain NamedThing
IceesStudyResult broad_synonym domain NamedThing
IceesStudyResult narrow_synonym domain NamedThing
IceesStudyResult related_synonym domain NamedThing
IceesStudyResult taxon domain NamedThing
Study provided_by domain NamedThing
Study xref domain NamedThing
Study full_name domain NamedThing
Study synonym domain NamedThing
Study exact_synonym domain NamedThing
Study broad_synonym domain NamedThing
Study narrow_synonym domain NamedThing
Study related_synonym domain NamedThing
Study taxon domain NamedThing
StudyVariable creation_date domain NamedThing
StudyVariable provided_by domain NamedThing
StudyVariable xref domain NamedThing
StudyVariable full_name domain NamedThing
StudyVariable synonym domain NamedThing
StudyVariable exact_synonym domain NamedThing
StudyVariable broad_synonym domain NamedThing
StudyVariable narrow_synonym domain NamedThing
StudyVariable related_synonym domain NamedThing
StudyVariable taxon domain NamedThing
CommonDataElement creation_date domain NamedThing
CommonDataElement provided_by domain NamedThing
CommonDataElement xref domain NamedThing
CommonDataElement full_name domain NamedThing
CommonDataElement synonym domain NamedThing
CommonDataElement exact_synonym domain NamedThing
CommonDataElement broad_synonym domain NamedThing
CommonDataElement narrow_synonym domain NamedThing
CommonDataElement related_synonym domain NamedThing
CommonDataElement taxon domain NamedThing
Agent address domain NamedThing
Agent provided_by domain NamedThing
Agent xref domain NamedThing
Agent full_name domain NamedThing
Agent synonym domain NamedThing
Agent exact_synonym domain NamedThing
Agent broad_synonym domain NamedThing
Agent narrow_synonym domain NamedThing
Agent related_synonym domain NamedThing
Agent taxon domain NamedThing
InformationContentEntity creation_date domain NamedThing
InformationContentEntity provided_by domain NamedThing
InformationContentEntity xref domain NamedThing
InformationContentEntity full_name domain NamedThing
InformationContentEntity synonym domain NamedThing
InformationContentEntity exact_synonym domain NamedThing
InformationContentEntity broad_synonym domain NamedThing
InformationContentEntity narrow_synonym domain NamedThing
InformationContentEntity related_synonym domain NamedThing
InformationContentEntity taxon domain NamedThing
Dataset creation_date domain NamedThing
Dataset provided_by domain NamedThing
Dataset xref domain NamedThing
Dataset full_name domain NamedThing
Dataset synonym domain NamedThing
Dataset exact_synonym domain NamedThing
Dataset broad_synonym domain NamedThing
Dataset narrow_synonym domain NamedThing
Dataset related_synonym domain NamedThing
Dataset taxon domain NamedThing
DatasetDistribution creation_date domain NamedThing
DatasetDistribution provided_by domain NamedThing
DatasetDistribution xref domain NamedThing
DatasetDistribution full_name domain NamedThing
DatasetDistribution synonym domain NamedThing
DatasetDistribution exact_synonym domain NamedThing
DatasetDistribution broad_synonym domain NamedThing
DatasetDistribution narrow_synonym domain NamedThing
DatasetDistribution related_synonym domain NamedThing
DatasetDistribution taxon domain NamedThing
DatasetVersion creation_date domain NamedThing
DatasetVersion provided_by domain NamedThing
DatasetVersion xref domain NamedThing
DatasetVersion full_name domain NamedThing
DatasetVersion synonym domain NamedThing
DatasetVersion exact_synonym domain NamedThing
DatasetVersion broad_synonym domain NamedThing
DatasetVersion narrow_synonym domain NamedThing
DatasetVersion related_synonym domain NamedThing
DatasetVersion taxon domain NamedThing
DatasetSummary creation_date domain NamedThing
DatasetSummary provided_by domain NamedThing
DatasetSummary xref domain NamedThing
DatasetSummary full_name domain NamedThing
DatasetSummary synonym domain NamedThing
DatasetSummary exact_synonym domain NamedThing
DatasetSummary broad_synonym domain NamedThing
DatasetSummary narrow_synonym domain NamedThing
DatasetSummary related_synonym domain NamedThing
DatasetSummary taxon domain NamedThing
ConfidenceLevel creation_date domain NamedThing
ConfidenceLevel provided_by domain NamedThing
ConfidenceLevel xref domain NamedThing
ConfidenceLevel full_name domain NamedThing
ConfidenceLevel synonym domain NamedThing
ConfidenceLevel exact_synonym domain NamedThing
ConfidenceLevel broad_synonym domain NamedThing
ConfidenceLevel narrow_synonym domain NamedThing
ConfidenceLevel related_synonym domain NamedThing
ConfidenceLevel taxon domain NamedThing
EvidenceType subsets domain NamedThing
EvidenceType provided_by domain NamedThing
EvidenceType xref domain NamedThing
EvidenceType full_name domain NamedThing
EvidenceType synonym domain NamedThing
EvidenceType exact_synonym domain NamedThing
EvidenceType broad_synonym domain NamedThing
EvidenceType narrow_synonym domain NamedThing
EvidenceType related_synonym domain NamedThing
EvidenceType taxon domain NamedThing
Evidence creation_date domain NamedThing
Evidence provided_by domain NamedThing
Evidence xref domain NamedThing
Evidence full_name domain NamedThing
Evidence synonym domain NamedThing
Evidence exact_synonym domain NamedThing
Evidence broad_synonym domain NamedThing
Evidence narrow_synonym domain NamedThing
Evidence related_synonym domain NamedThing
Evidence taxon domain NamedThing
Publication xref domain NamedThing
Publication creation_date domain NamedThing
Publication provided_by domain NamedThing
Publication full_name domain NamedThing
Publication synonym domain NamedThing
Publication exact_synonym domain NamedThing
Publication broad_synonym domain NamedThing
Publication narrow_synonym domain NamedThing
Publication related_synonym domain NamedThing
Publication taxon domain NamedThing
Book xref domain NamedThing
Book creation_date domain NamedThing
Book provided_by domain NamedThing
Book full_name domain NamedThing
Book synonym domain NamedThing
Book exact_synonym domain NamedThing
Book broad_synonym domain NamedThing
Book narrow_synonym domain NamedThing
Book related_synonym domain NamedThing
Book taxon domain NamedThing
BookChapter xref domain NamedThing
BookChapter creation_date domain NamedThing
BookChapter provided_by domain NamedThing
BookChapter full_name domain NamedThing
BookChapter synonym domain NamedThing
BookChapter exact_synonym domain NamedThing
BookChapter broad_synonym domain NamedThing
BookChapter narrow_synonym domain NamedThing
BookChapter related_synonym domain NamedThing
BookChapter taxon domain NamedThing
Serial xref domain NamedThing
Serial creation_date domain NamedThing
Serial provided_by domain NamedThing
Serial full_name domain NamedThing
Serial synonym domain NamedThing
Serial exact_synonym domain NamedThing
Serial broad_synonym domain NamedThing
Serial narrow_synonym domain NamedThing
Serial related_synonym domain NamedThing
Serial taxon domain NamedThing
Article xref domain NamedThing
Article creation_date domain NamedThing
Article provided_by domain NamedThing
Article full_name domain NamedThing
Article synonym domain NamedThing
Article exact_synonym domain NamedThing
Article broad_synonym domain NamedThing
Article narrow_synonym domain NamedThing
Article related_synonym domain NamedThing
Article taxon domain NamedThing
JournalArticle xref domain NamedThing
JournalArticle creation_date domain NamedThing
JournalArticle provided_by domain NamedThing
JournalArticle full_name domain NamedThing
JournalArticle synonym domain NamedThing
JournalArticle exact_synonym domain NamedThing
JournalArticle broad_synonym domain NamedThing
JournalArticle narrow_synonym domain NamedThing
JournalArticle related_synonym domain NamedThing
JournalArticle taxon domain NamedThing
Patent xref domain NamedThing
Patent creation_date domain NamedThing
Patent provided_by domain NamedThing
Patent full_name domain NamedThing
Patent synonym domain NamedThing
Patent exact_synonym domain NamedThing
Patent broad_synonym domain NamedThing
Patent narrow_synonym domain NamedThing
Patent related_synonym domain NamedThing
Patent taxon domain NamedThing
WebPage xref domain NamedThing
WebPage creation_date domain NamedThing
WebPage provided_by domain NamedThing
WebPage full_name domain NamedThing
WebPage synonym domain NamedThing
WebPage exact_synonym domain NamedThing
WebPage broad_synonym domain NamedThing
WebPage narrow_synonym domain NamedThing
WebPage related_synonym domain NamedThing
WebPage taxon domain NamedThing
PreprintPublication xref domain NamedThing
PreprintPublication creation_date domain NamedThing
PreprintPublication provided_by domain NamedThing
PreprintPublication full_name domain NamedThing
PreprintPublication synonym domain NamedThing
PreprintPublication exact_synonym domain NamedThing
PreprintPublication broad_synonym domain NamedThing
PreprintPublication narrow_synonym domain NamedThing
PreprintPublication related_synonym domain NamedThing
PreprintPublication taxon domain NamedThing
DrugLabel xref domain NamedThing
DrugLabel creation_date domain NamedThing
DrugLabel provided_by domain NamedThing
DrugLabel full_name domain NamedThing
DrugLabel synonym domain NamedThing
DrugLabel exact_synonym domain NamedThing
DrugLabel broad_synonym domain NamedThing
DrugLabel narrow_synonym domain NamedThing
DrugLabel related_synonym domain NamedThing
DrugLabel taxon domain NamedThing
RetrievalSource xref domain NamedThing
RetrievalSource creation_date domain NamedThing
RetrievalSource provided_by domain NamedThing
RetrievalSource full_name domain NamedThing
RetrievalSource synonym domain NamedThing
RetrievalSource exact_synonym domain NamedThing
RetrievalSource broad_synonym domain NamedThing
RetrievalSource narrow_synonym domain NamedThing
RetrievalSource related_synonym domain NamedThing
RetrievalSource taxon domain NamedThing
PhysicalEntity provided_by domain NamedThing
PhysicalEntity xref domain NamedThing
PhysicalEntity full_name domain NamedThing
PhysicalEntity synonym domain NamedThing
PhysicalEntity exact_synonym domain NamedThing
PhysicalEntity broad_synonym domain NamedThing
PhysicalEntity narrow_synonym domain NamedThing
PhysicalEntity related_synonym domain NamedThing
PhysicalEntity taxon domain NamedThing
Activity provided_by domain NamedThing
Activity xref domain NamedThing
Activity full_name domain NamedThing
Activity synonym domain NamedThing
Activity exact_synonym domain NamedThing
Activity broad_synonym domain NamedThing
Activity narrow_synonym domain NamedThing
Activity related_synonym domain NamedThing
Activity taxon domain NamedThing
Procedure provided_by domain NamedThing
Procedure xref domain NamedThing
Procedure full_name domain NamedThing
Procedure synonym domain NamedThing
Procedure exact_synonym domain NamedThing
Procedure broad_synonym domain NamedThing
Procedure narrow_synonym domain NamedThing
Procedure related_synonym domain NamedThing
Procedure taxon domain NamedThing
Phenomenon provided_by domain NamedThing
Phenomenon xref domain NamedThing
Phenomenon full_name domain NamedThing
Phenomenon synonym domain NamedThing
Phenomenon exact_synonym domain NamedThing
Phenomenon broad_synonym domain NamedThing
Phenomenon narrow_synonym domain NamedThing
Phenomenon related_synonym domain NamedThing
Phenomenon taxon domain NamedThing
Device provided_by domain NamedThing
Device xref domain NamedThing
Device full_name domain NamedThing
Device synonym domain NamedThing
Device exact_synonym domain NamedThing
Device broad_synonym domain NamedThing
Device narrow_synonym domain NamedThing
Device related_synonym domain NamedThing
Device taxon domain NamedThing
DiagnosticAid provided_by domain NamedThing
DiagnosticAid xref domain NamedThing
DiagnosticAid full_name domain NamedThing
DiagnosticAid synonym domain NamedThing
DiagnosticAid exact_synonym domain NamedThing
DiagnosticAid broad_synonym domain NamedThing
DiagnosticAid narrow_synonym domain NamedThing
DiagnosticAid related_synonym domain NamedThing
DiagnosticAid taxon domain NamedThing
StudyPopulation provided_by domain NamedThing
StudyPopulation xref domain NamedThing
StudyPopulation full_name domain NamedThing
StudyPopulation synonym domain NamedThing
StudyPopulation exact_synonym domain NamedThing
StudyPopulation broad_synonym domain NamedThing
StudyPopulation narrow_synonym domain NamedThing
StudyPopulation related_synonym domain NamedThing
StudyPopulation taxon domain NamedThing
MaterialSample provided_by domain NamedThing
MaterialSample xref domain NamedThing
MaterialSample full_name domain NamedThing
MaterialSample synonym domain NamedThing
MaterialSample exact_synonym domain NamedThing
MaterialSample broad_synonym domain NamedThing
MaterialSample narrow_synonym domain NamedThing
MaterialSample related_synonym domain NamedThing
MaterialSample taxon domain NamedThing
PlanetaryEntity provided_by domain NamedThing
PlanetaryEntity xref domain NamedThing
PlanetaryEntity full_name domain NamedThing
PlanetaryEntity synonym domain NamedThing
PlanetaryEntity exact_synonym domain NamedThing
PlanetaryEntity broad_synonym domain NamedThing
PlanetaryEntity narrow_synonym domain NamedThing
PlanetaryEntity related_synonym domain NamedThing
PlanetaryEntity taxon domain NamedThing
EnvironmentalProcess provided_by domain NamedThing
EnvironmentalProcess xref domain NamedThing
EnvironmentalProcess full_name domain NamedThing
EnvironmentalProcess synonym domain NamedThing
EnvironmentalProcess exact_synonym domain NamedThing
EnvironmentalProcess broad_synonym domain NamedThing
EnvironmentalProcess narrow_synonym domain NamedThing
EnvironmentalProcess related_synonym domain NamedThing
EnvironmentalProcess taxon domain NamedThing
EnvironmentalFeature provided_by domain NamedThing
EnvironmentalFeature xref domain NamedThing
EnvironmentalFeature full_name domain NamedThing
EnvironmentalFeature synonym domain NamedThing
EnvironmentalFeature exact_synonym domain NamedThing
EnvironmentalFeature broad_synonym domain NamedThing
EnvironmentalFeature narrow_synonym domain NamedThing
EnvironmentalFeature related_synonym domain NamedThing
EnvironmentalFeature taxon domain NamedThing
GeographicLocation latitude domain NamedThing
GeographicLocation longitude domain NamedThing
GeographicLocation provided_by domain NamedThing
GeographicLocation xref domain NamedThing
GeographicLocation full_name domain NamedThing
GeographicLocation synonym domain NamedThing
GeographicLocation exact_synonym domain NamedThing
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NamedThingAssociatedWithLikelihoodOfNamedThingAssociation update_date domain NamedThing
NamedThingAssociatedWithLikelihoodOfNamedThingAssociation elevate_to_prediction domain NamedThing
ChemicalGeneInteractionAssociation update_date domain NamedThing
ChemicalGeneInteractionAssociation elevate_to_prediction domain NamedThing
MacromolecularMachineHasSubstrateAssociation update_date domain NamedThing
MacromolecularMachineHasSubstrateAssociation elevate_to_prediction domain NamedThing
GeneRegulatesGeneAssociation update_date domain NamedThing
GeneRegulatesGeneAssociation elevate_to_prediction domain NamedThing
ProcessRegulatesProcessAssociation update_date domain NamedThing
ProcessRegulatesProcessAssociation elevate_to_prediction domain NamedThing
ChemicalAffectsBiologicalEntityAssociation update_date domain NamedThing
ChemicalAffectsBiologicalEntityAssociation elevate_to_prediction domain NamedThing
ChemicalAffectsGeneAssociation update_date domain NamedThing
ChemicalAffectsGeneAssociation elevate_to_prediction domain NamedThing
GeneAffectsChemicalAssociation update_date domain NamedThing
GeneAffectsChemicalAssociation elevate_to_prediction domain NamedThing
DrugToGeneAssociation update_date domain NamedThing
DrugToGeneAssociation elevate_to_prediction domain NamedThing
MaterialSampleToEntityAssociationMixin object range NamedThing
MaterialSampleDerivationAssociation object range NamedThing
MaterialSampleDerivationAssociation update_date domain NamedThing
MaterialSampleDerivationAssociation elevate_to_prediction domain NamedThing
MaterialSampleToDiseaseOrPhenotypicFeatureAssociation update_date domain NamedThing
MaterialSampleToDiseaseOrPhenotypicFeatureAssociation elevate_to_prediction domain NamedThing
DiseaseToEntityAssociationMixin object range NamedThing
EntityToExposureEventAssociationMixin subject range NamedThing
DiseaseToExposureEventAssociation update_date domain NamedThing
DiseaseToExposureEventAssociation elevate_to_prediction domain NamedThing
EntityToOutcomeAssociationMixin subject range NamedThing
ExposureEventToOutcomeAssociation subject range NamedThing
ExposureEventToOutcomeAssociation update_date domain NamedThing
ExposureEventToOutcomeAssociation elevate_to_prediction domain NamedThing
FrequencyQualifierMixin subject range NamedThing
FrequencyQualifierMixin object range NamedThing
EntityToFeatureOrDiseaseQualifiersMixin subject range NamedThing
EntityToFeatureOrDiseaseQualifiersMixin object range NamedThing
EntityToFeatureOrVariantQualifiersMixin subject range NamedThing
EntityToFeatureOrVariantQualifiersMixin object range NamedThing
EntityToFeatureOrGeneQualifiersMixin subject range NamedThing
EntityToFeatureOrGeneQualifiersMixin object range NamedThing
FeatureOrDiseaseQualifiersToEntityMixin subject range NamedThing
FeatureOrDiseaseQualifiersToEntityMixin object range NamedThing
EntityToPhenotypicFeatureAssociationMixin subject range NamedThing
EntityToPhenotypicFeatureAssociationMixin has_count domain NamedThing
EntityToPhenotypicFeatureAssociationMixin has_total domain NamedThing
EntityToPhenotypicFeatureAssociationMixin has_quotient domain NamedThing
EntityToPhenotypicFeatureAssociationMixin has_percentage domain NamedThing
PhenotypicFeatureToEntityAssociationMixin has_count domain NamedThing
PhenotypicFeatureToEntityAssociationMixin has_total domain NamedThing
PhenotypicFeatureToEntityAssociationMixin has_quotient domain NamedThing
PhenotypicFeatureToEntityAssociationMixin has_percentage domain NamedThing
PhenotypicFeatureToEntityAssociationMixin object range NamedThing
PhenotypicFeatureToPhenotypicFeatureAssociation update_date domain NamedThing
PhenotypicFeatureToPhenotypicFeatureAssociation elevate_to_prediction domain NamedThing
PhenotypicFeatureToPhenotypicFeatureAssociation has_count domain NamedThing
PhenotypicFeatureToPhenotypicFeatureAssociation has_total domain NamedThing
PhenotypicFeatureToPhenotypicFeatureAssociation has_quotient domain NamedThing
PhenotypicFeatureToPhenotypicFeatureAssociation has_percentage domain NamedThing
InformationContentEntityToNamedThingAssociation subject range NamedThing
InformationContentEntityToNamedThingAssociation object range NamedThing
InformationContentEntityToNamedThingAssociation update_date domain NamedThing
InformationContentEntityToNamedThingAssociation elevate_to_prediction domain NamedThing
EntityToDiseaseAssociationMixin subject range NamedThing
DiseaseOrPhenotypicFeatureToEntityAssociationMixin object range NamedThing
DiseaseOrPhenotypicFeatureToLocationAssociation update_date domain NamedThing
DiseaseOrPhenotypicFeatureToLocationAssociation elevate_to_prediction domain NamedThing
DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation update_date domain NamedThing
DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation elevate_to_prediction domain NamedThing
EntityToDiseaseOrPhenotypicFeatureAssociationMixin subject range NamedThing
GenotypeToEntityAssociationMixin object range NamedThing
GenotypeToPhenotypicFeatureAssociation update_date domain NamedThing
GenotypeToPhenotypicFeatureAssociation elevate_to_prediction domain NamedThing
GenotypeToPhenotypicFeatureAssociation has_count domain NamedThing
GenotypeToPhenotypicFeatureAssociation has_total domain NamedThing
GenotypeToPhenotypicFeatureAssociation has_quotient domain NamedThing
GenotypeToPhenotypicFeatureAssociation has_percentage domain NamedThing
ExposureEventToPhenotypicFeatureAssociation update_date domain NamedThing
ExposureEventToPhenotypicFeatureAssociation elevate_to_prediction domain NamedThing
ExposureEventToPhenotypicFeatureAssociation has_count domain NamedThing
ExposureEventToPhenotypicFeatureAssociation has_total domain NamedThing
ExposureEventToPhenotypicFeatureAssociation has_quotient domain NamedThing
ExposureEventToPhenotypicFeatureAssociation has_percentage domain NamedThing
DiseaseToPhenotypicFeatureAssociation has_count domain NamedThing
DiseaseToPhenotypicFeatureAssociation has_total domain NamedThing
DiseaseToPhenotypicFeatureAssociation has_quotient domain NamedThing
DiseaseToPhenotypicFeatureAssociation has_percentage domain NamedThing
DiseaseToPhenotypicFeatureAssociation update_date domain NamedThing
DiseaseToPhenotypicFeatureAssociation elevate_to_prediction domain NamedThing
CaseToPhenotypicFeatureAssociation update_date domain NamedThing
CaseToPhenotypicFeatureAssociation elevate_to_prediction domain NamedThing
CaseToPhenotypicFeatureAssociation has_count domain NamedThing
CaseToPhenotypicFeatureAssociation has_total domain NamedThing
CaseToPhenotypicFeatureAssociation has_quotient domain NamedThing
CaseToPhenotypicFeatureAssociation has_percentage domain NamedThing
CaseToDiseaseAssociation update_date domain NamedThing
CaseToDiseaseAssociation elevate_to_prediction domain NamedThing
CaseToVariantAssociation update_date domain NamedThing
CaseToVariantAssociation elevate_to_prediction domain NamedThing
CaseToGeneAssociation update_date domain NamedThing
CaseToGeneAssociation elevate_to_prediction domain NamedThing
BehaviorToBehavioralFeatureAssociation update_date domain NamedThing
BehaviorToBehavioralFeatureAssociation elevate_to_prediction domain NamedThing
BehaviorToBehavioralFeatureAssociation has_count domain NamedThing
BehaviorToBehavioralFeatureAssociation has_total domain NamedThing
BehaviorToBehavioralFeatureAssociation has_quotient domain NamedThing
BehaviorToBehavioralFeatureAssociation has_percentage domain NamedThing
GeneToEntityAssociationMixin object range NamedThing
VariantToEntityAssociationMixin object range NamedThing
GeneToPhenotypicFeatureAssociation update_date domain NamedThing
GeneToPhenotypicFeatureAssociation elevate_to_prediction domain NamedThing
GeneToPhenotypicFeatureAssociation has_count domain NamedThing
GeneToPhenotypicFeatureAssociation has_total domain NamedThing
GeneToPhenotypicFeatureAssociation has_quotient domain NamedThing
GeneToPhenotypicFeatureAssociation has_percentage domain NamedThing
GeneToDiseaseAssociation update_date domain NamedThing
GeneToDiseaseAssociation elevate_to_prediction domain NamedThing
CausalGeneToDiseaseAssociation update_date domain NamedThing
CausalGeneToDiseaseAssociation elevate_to_prediction domain NamedThing
CorrelatedGeneToDiseaseAssociation update_date domain NamedThing
CorrelatedGeneToDiseaseAssociation elevate_to_prediction domain NamedThing
DruggableGeneToDiseaseAssociation update_date domain NamedThing
DruggableGeneToDiseaseAssociation elevate_to_prediction domain NamedThing
PhenotypicFeatureToDiseaseAssociation update_date domain NamedThing
PhenotypicFeatureToDiseaseAssociation elevate_to_prediction domain NamedThing
PhenotypicFeatureToDiseaseAssociation has_count domain NamedThing
PhenotypicFeatureToDiseaseAssociation has_total domain NamedThing
PhenotypicFeatureToDiseaseAssociation has_quotient domain NamedThing
PhenotypicFeatureToDiseaseAssociation has_percentage domain NamedThing
VariantToGeneAssociation update_date domain NamedThing
VariantToGeneAssociation elevate_to_prediction domain NamedThing
VariantToGeneExpressionAssociation update_date domain NamedThing
VariantToGeneExpressionAssociation elevate_to_prediction domain NamedThing
VariantToPopulationAssociation has_count domain NamedThing
VariantToPopulationAssociation has_total domain NamedThing
VariantToPopulationAssociation has_quotient domain NamedThing
VariantToPopulationAssociation has_percentage domain NamedThing
VariantToPopulationAssociation update_date domain NamedThing
VariantToPopulationAssociation elevate_to_prediction domain NamedThing
PopulationToPopulationAssociation update_date domain NamedThing
PopulationToPopulationAssociation elevate_to_prediction domain NamedThing
VariantToPhenotypicFeatureAssociation update_date domain NamedThing
VariantToPhenotypicFeatureAssociation elevate_to_prediction domain NamedThing
VariantToPhenotypicFeatureAssociation has_count domain NamedThing
VariantToPhenotypicFeatureAssociation has_total domain NamedThing
VariantToPhenotypicFeatureAssociation has_quotient domain NamedThing
VariantToPhenotypicFeatureAssociation has_percentage domain NamedThing
VariantToDiseaseAssociation update_date domain NamedThing
VariantToDiseaseAssociation elevate_to_prediction domain NamedThing
GenotypeToDiseaseAssociation update_date domain NamedThing
GenotypeToDiseaseAssociation elevate_to_prediction domain NamedThing
ModelToDiseaseAssociationMixin subject range NamedThing
ModelToDiseaseAssociationMixin object range NamedThing
GeneAsAModelOfDiseaseAssociation update_date domain NamedThing
GeneAsAModelOfDiseaseAssociation elevate_to_prediction domain NamedThing
VariantAsAModelOfDiseaseAssociation update_date domain NamedThing
VariantAsAModelOfDiseaseAssociation elevate_to_prediction domain NamedThing
GenotypeAsAModelOfDiseaseAssociation update_date domain NamedThing
GenotypeAsAModelOfDiseaseAssociation elevate_to_prediction domain NamedThing
CellLineAsAModelOfDiseaseAssociation update_date domain NamedThing
CellLineAsAModelOfDiseaseAssociation elevate_to_prediction domain NamedThing
OrganismalEntityAsAModelOfDiseaseAssociation update_date domain NamedThing
OrganismalEntityAsAModelOfDiseaseAssociation elevate_to_prediction domain NamedThing
OrganismToOrganismAssociation update_date domain NamedThing
OrganismToOrganismAssociation elevate_to_prediction domain NamedThing
TaxonToTaxonAssociation update_date domain NamedThing
TaxonToTaxonAssociation elevate_to_prediction domain NamedThing
GeneHasVariantThatContributesToDiseaseAssociation update_date domain NamedThing
GeneHasVariantThatContributesToDiseaseAssociation elevate_to_prediction domain NamedThing
GeneToExpressionSiteAssociation update_date domain NamedThing
GeneToExpressionSiteAssociation elevate_to_prediction domain NamedThing
SequenceVariantModulatesTreatmentAssociation update_date domain NamedThing
SequenceVariantModulatesTreatmentAssociation elevate_to_prediction domain NamedThing
FunctionalAssociation update_date domain NamedThing
FunctionalAssociation elevate_to_prediction domain NamedThing
MacromolecularMachineToEntityAssociationMixin subject range NamedThing
MacromolecularMachineToEntityAssociationMixin object range NamedThing
MacromolecularMachineToMolecularActivityAssociation update_date domain NamedThing
MacromolecularMachineToMolecularActivityAssociation elevate_to_prediction domain NamedThing
MacromolecularMachineToBiologicalProcessAssociation update_date domain NamedThing
MacromolecularMachineToBiologicalProcessAssociation elevate_to_prediction domain NamedThing
MacromolecularMachineToCellularComponentAssociation update_date domain NamedThing
MacromolecularMachineToCellularComponentAssociation elevate_to_prediction domain NamedThing
MolecularActivityToChemicalEntityAssociation update_date domain NamedThing
MolecularActivityToChemicalEntityAssociation elevate_to_prediction domain NamedThing
MolecularActivityToMolecularActivityAssociation update_date domain NamedThing
MolecularActivityToMolecularActivityAssociation elevate_to_prediction domain NamedThing
GeneToGoTermAssociation update_date domain NamedThing
GeneToGoTermAssociation elevate_to_prediction domain NamedThing
EntityToDiseaseAssociation number_of_cases domain NamedThing
EntityToDiseaseAssociation subject range NamedThing
EntityToDiseaseAssociation object range NamedThing
EntityToDiseaseAssociation update_date domain NamedThing
EntityToDiseaseAssociation elevate_to_prediction domain NamedThing
EntityToPhenotypicFeatureAssociation number_of_cases domain NamedThing
EntityToPhenotypicFeatureAssociation subject range NamedThing
EntityToPhenotypicFeatureAssociation object range NamedThing
EntityToPhenotypicFeatureAssociation update_date domain NamedThing
EntityToPhenotypicFeatureAssociation elevate_to_prediction domain NamedThing
SequenceAssociation subject range NamedThing
SequenceAssociation object range NamedThing
SequenceAssociation update_date domain NamedThing
SequenceAssociation elevate_to_prediction domain NamedThing
GenomicSequenceLocalization update_date domain NamedThing
GenomicSequenceLocalization elevate_to_prediction domain NamedThing
SequenceFeatureRelationship update_date domain NamedThing
SequenceFeatureRelationship elevate_to_prediction domain NamedThing
TranscriptToGeneRelationship update_date domain NamedThing
TranscriptToGeneRelationship elevate_to_prediction domain NamedThing
GeneToGeneProductRelationship update_date domain NamedThing
GeneToGeneProductRelationship elevate_to_prediction domain NamedThing
ExonToTranscriptRelationship update_date domain NamedThing
ExonToTranscriptRelationship elevate_to_prediction domain NamedThing
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation update_date domain NamedThing
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation elevate_to_prediction domain NamedThing
AnatomicalEntityToAnatomicalEntityAssociation update_date domain NamedThing
AnatomicalEntityToAnatomicalEntityAssociation elevate_to_prediction domain NamedThing
AnatomicalEntityHasPartAnatomicalEntityAssociation update_date domain NamedThing
AnatomicalEntityHasPartAnatomicalEntityAssociation elevate_to_prediction domain NamedThing
AnatomicalEntityPartOfAnatomicalEntityAssociation update_date domain NamedThing
AnatomicalEntityPartOfAnatomicalEntityAssociation elevate_to_prediction domain NamedThing
AnatomicalEntityToAnatomicalEntityOntogenicAssociation update_date domain NamedThing
AnatomicalEntityToAnatomicalEntityOntogenicAssociation elevate_to_prediction domain NamedThing
GeneOrGeneProductOrGeneFamilyToAnatomicalEntityAssociation update_date domain NamedThing
GeneOrGeneProductOrGeneFamilyToAnatomicalEntityAssociation elevate_to_prediction domain NamedThing
BiologicalProcessOrActivityToAnatomicalEntityAssociation update_date domain NamedThing
BiologicalProcessOrActivityToAnatomicalEntityAssociation elevate_to_prediction domain NamedThing
OrganismTaxonToEntityAssociation object range NamedThing
OrganismTaxonToOrganismTaxonAssociation update_date domain NamedThing
OrganismTaxonToOrganismTaxonAssociation elevate_to_prediction domain NamedThing
OrganismTaxonToOrganismTaxonSpecialization update_date domain NamedThing
OrganismTaxonToOrganismTaxonSpecialization elevate_to_prediction domain NamedThing
OrganismTaxonToOrganismTaxonInteraction update_date domain NamedThing
OrganismTaxonToOrganismTaxonInteraction elevate_to_prediction domain NamedThing
OrganismTaxonToEnvironmentAssociation object range NamedThing
OrganismTaxonToEnvironmentAssociation update_date domain NamedThing
OrganismTaxonToEnvironmentAssociation elevate_to_prediction domain NamedThing

LinkML Source

name: named thing
description: a databased entity or concept/class
from_schema: https://w3id.org/biolink/vocab/
exact_mappings:
- BFO:0000001
- WIKIDATA:Q35120
- UMLSSG:OBJC
- STY:T071
- dcid:Thing
is_a: entity
slots:
- provided by
- xref
- full name
- synonym
- exact synonym
- broad synonym
- narrow synonym
- related synonym
- equivalent identifiers
- information content
- taxon
slot_usage:
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    name: category
    required: true