Slot: species_context_qualifier
Description: A statement qualifier representing a taxonomic category of species in which a relationship expressed in an association took place.
Notes: Ontology CURIEs are expected as values here, the examples below are intended to help clarify the content of the CURIEs.
Notes: Ontology CURIEs are expected as values here, the examples below are intended to help clarify the content of the CURIEs.
Domain: Association
Range: OrganismTaxon
Inheritance
- association_slot
- qualifier
- statement_qualifier
- species_context_qualifier
- statement_qualifier
- qualifier
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| MacromolecularMachineToEntityAssociationMixin | an association which has a macromolecular machine mixin as a subject | no |
| ChemicalGeneInteractionAssociation | describes an interaction between a chemical entity and a gene or gene product. Any biological or chemical effect resulting from such an interaction are out of scope, and covered by the ChemicalAffectsGeneAssociation type (e.g. impact of a chemical on the abundance, activity, structure, etc, of either participant in the interaction) | no |
| GeneRegulatesGeneAssociation | Describes a regulatory relationship between two genes or gene products. | no |
| ChemicalAffectsBiologicalEntityAssociation | Describes an effect that a chemical has on a biological entity (e.g. an impact of on its abundance, activity,localization, processing, expression, etc.) | yes |
| GeneToGeneAssociation | parent class for different kinds of gene-gene or gene product to gene product relationships. Includes homology and interaction. | no |
| MacromolecularMachineHasSubstrateAssociation | Describes the relationship between an enzyme (usually a macromolecular complex or gene product) and the molecules it acts on (substrate). The substrate can be a chemical, a polypeptide, or a protein. | no |
| PredicateMapping | A deprecated predicate mapping object contains the deprecated predicate and an example of the rewiring that should be done to use a qualified statement in its place. | no |
| ChemicalEntityToChemicalEntityAssociation | A relationship between two chemical entities. This can encompass actual interactions as well as temporal causal edges, e.g. one chemical converted to another. | no |
| ChemicalEntityToBiologicalProcessAssociation | An association between a chemical entity and a biological process, where the chemical entity has some effect on the biological process. | no |
| GeneAffectsChemicalAssociation | Describes an effect that a gene or gene product has on a chemical entity (e.g. an impact of on its abundance, activity, localization, processing, transport, etc.) | yes |
Example values
| Slot Name | Value |
|---|---|
| species_context_qualifier | NCBITaxon:7955 |
| species_context_qualifier | NCBITaxon:9606 |
LinkML Source
name: species context qualifier
description: A statement qualifier representing a taxonomic category of species in
which a relationship expressed in an association took place.
notes:
- Ontology CURIEs are expected as values here, the examples below are intended to
help clarify the content of the CURIEs.
examples:
- value: NCBITaxon:7955
description: zebrafish
- value: NCBITaxon:9606
description: human
in_subset:
- translator_minimal
from_schema: https://w3id.org/biolink/vocab/
is_a: statement qualifier
domain: association
alias: species_context_qualifier
domain_of:
- predicate mapping
- gene to gene association
- chemical entity to chemical entity association
- chemical entity to biological process association
- chemical gene interaction association
- macromolecular machine has substrate association
- gene regulates gene association
- chemical affects biological entity association
- gene affects chemical association
- macromolecular machine to entity association mixin
range: organism taxon