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Class: EntityToDiseaseOrPhenotypicFeatureAssociationMixin

classDiagram class EntityToDiseaseOrPhenotypicFeatureAssociationMixin EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- CellLineToDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- ChemicalEntityToDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- ChemicalOrDrugOrTreatmentAdverseEventAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- ChemicalOrDrugOrTreatmentSideEffectAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- MaterialSampleToDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin : anatomical_context_qualifier EntityToDiseaseOrPhenotypicFeatureAssociationMixin : disease_context_qualifier EntityToDiseaseOrPhenotypicFeatureAssociationMixin --|> Disease : disease_context_qualifier EntityToDiseaseOrPhenotypicFeatureAssociationMixin : object EntityToDiseaseOrPhenotypicFeatureAssociationMixin --|> DiseaseOrPhenotypicFeature : object EntityToDiseaseOrPhenotypicFeatureAssociationMixin : object_specialization_qualifier EntityToDiseaseOrPhenotypicFeatureAssociationMixin : predicate EntityToDiseaseOrPhenotypicFeatureAssociationMixin : subject EntityToDiseaseOrPhenotypicFeatureAssociationMixin --|> NamedThing : subject EntityToDiseaseOrPhenotypicFeatureAssociationMixin : subject_specialization_qualifier

Slots

Name Cardinality and Range Inheritance Examples
subject:
connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object. 		1
NamedThing		 direct
predicate:
Has a value from the Biolink 'related_to' hierarchy. In RDF, this corresponds to rdf:predicate and in Neo4j this corresponds to the relationship type. The convention is for an edge label in snake_case form. For example, biolink:related_to, biolink:causes, biolink:treats 		1
Uriorcurie		 direct
object:
disease or phenotype 		1
DiseaseOrPhenotypicFeature		 direct MONDO:0017314, MP:0013229
disease_context_qualifier:
A context qualifier representing a disease or condition in which a relationship expressed in an association took place. 		0..1
Disease		 direct MONDO:0004979, MONDO:0005148
subject_specialization_qualifier:
A qualifier that composes with a core subject/object concept to define a more specific version of the subject concept, specifically using an ontology term that is not a subclass or descendant of the core concept and in the vast majority of cases, is of a different ontological namespace than the category or namespace of the subject identifier. 		0..1
Uriorcurie		 direct
object_specialization_qualifier:
A qualifier that composes with a core subject/object concept to define a more specific version of the subject concept, specifically using an ontology term that is not a subclass or descendant of the core concept and in the vast majority of cases, is of a different ontological namespace than the category or namespace of the subject identifier. 		0..1
Uriorcurie		 direct
anatomical_context_qualifier:
A statement qualifier representing an anatomical location where an relationship expressed in an association took place (can be a tissue, cell type, or sub-cellular location). 		*
String		 direct blood, cerebral cortext

Mixin Usage

mixed into description
CellLineToDiseaseOrPhenotypicFeatureAssociation An relationship between a cell line and a disease or a phenotype, where the cell line is derived from an individual with that disease or phenotype.
ChemicalEntityToDiseaseOrPhenotypicFeatureAssociation An interaction between a chemical entity and a phenotype or disease, where the presence of the chemical gives rise to or exacerbates the phenotype.
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation This association defines a relationship between a chemical or treatment (or procedure) and a disease or phenotypic feature where the chemical or treatment is used to treat, or is being studied to treat, the disease or phenotypic feature.
ChemicalOrDrugOrTreatmentAdverseEventAssociation This association defines a relationship between a chemical or treatment (or procedure) and a disease or phenotypic feature where the disease or phenotypic feature is an untoward medical occurrence that happens during treatment, whether or not considered related to the treatment.
ChemicalOrDrugOrTreatmentSideEffectAssociation This association defines a relationship between a chemical or treatment (or procedure) and a disease or phenotypic feature where the disease or phenotypic feature is an unintended, but predictable, secondary effect of the treatment.
MaterialSampleToDiseaseOrPhenotypicFeatureAssociation An association between a material sample and a disease or phenotype.

LinkML Source

name: entity to disease or phenotypic feature association mixin
from_schema: https://w3id.org/biolink/vocab/
mixin: true
slots:
- subject
- predicate
- object
- disease context qualifier
- subject specialization qualifier
- object specialization qualifier
- anatomical context qualifier
slot_usage:
  object:
    name: object
    description: disease or phenotype
    examples:
    - value: MONDO:0017314
      description: Ehlers-Danlos syndrome, vascular type
    - value: MP:0013229
      description: abnormal brain ventricle size
    range: disease or phenotypic feature
defining_slots:
- subject
- predicate
- object