Class: Disease
Description: A disorder of structure or function, especially one that produces specific signs, phenotypes or symptoms or that affects a specific location and is not simply a direct result of physical injury. A disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism.
Aliases: condition, disorder, medical condition
classDiagram
class Disease
DiseaseOrPhenotypicFeature <|-- Disease
Disease : category
Disease : deprecated
Disease : description
Disease : full_name
Disease : has_attribute
Disease --|> Attribute : has_attribute
Disease : id
Disease : in_taxon
Disease --|> OrganismTaxon : in_taxon
Disease : in_taxon_label
Disease : iri
Disease : name
Disease : provided_by
Disease : synonym
Disease : type
Disease : xref
Inheritance
Slots
| Name | Cardinality and Range | Inheritance | Examples |
|---|---|---|---|
| in_taxon: connects an entity to its taxonomic classification. Only certain kinds of entities can be taxonomically classified; see 'thing with taxon' |
0..* OrganismTaxon |
ThingWithTaxon | |
| in_taxon_label: The human readable scientific name for the taxon of the entity. |
0..1 LabelType |
ThingWithTaxon | |
| provided_by: The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph. |
0..* String |
NamedThing | |
| xref: A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references. |
0..* Uriorcurie |
NamedThing | |
| full_name: a long-form human readable name for a thing |
0..1 LabelType |
NamedThing | |
| synonym: Alternate human-readable names for a thing |
0..* LabelType |
NamedThing | |
| id: A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI |
1..1 String |
Entity | |
| iri: An IRI for an entity. This is determined by the id using expansion rules. |
0..1 IriType |
Entity | |
| category: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing} |
1..* Uriorcurie |
Entity | |
| type: None |
0..* String |
Entity | |
| name: A human-readable name for an attribute or entity. |
0..1 LabelType |
Entity | |
| description: a human-readable description of an entity |
0..1 NarrativeText |
Entity | |
| has_attribute: connects any entity to an attribute |
0..* Attribute |
Entity | |
| deprecated: A boolean flag indicating that an entity is no longer considered current or valid. |
0..1 Boolean |
Entity |
Usages
Valid ID Prefixes
Instances of this class should have identifiers with one of the following prefixes, ordered with the most preferred first:
LinkML Source
name: disease
id_prefixes:
- MONDO
- DOID
- OMIM
- OMIM.PS
- orphanet
- EFO
- UMLS
- MESH
- MEDDRA
- NCIT
- SNOMEDCT
- medgen
- ICD10
- ICD9
- KEGG.DISEASE
- HP
- MP
- PHARMGKB.DISEASE
description: A disorder of structure or function, especially one that produces specific
signs, phenotypes or symptoms or that affects a specific location and is not simply
a direct result of physical injury. A disposition to undergo pathological processes
that exists in an organism because of one or more disorders in that organism.
in_subset:
- model_organism_database
- translator_minimal
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- condition
- disorder
- medical condition
exact_mappings:
- MONDO:0000001
- DOID:4
- NCIT:C2991
- WIKIDATA:Q12136
- SIO:010299
- UMLSSG:DISO
- STY:T047
- dcid:Disease
narrow_mappings:
- STY:T019
- STY:T020
- STY:T048
- STY:T049
- STY:T191
- MONDO:0042489
is_a: disease or phenotypic feature