Class: named thing

a databased entity or concept/class

URI: biolink:NamedThing

Children

• AdministrativeEntity
• BiologicalEntity
• ClinicalEntity - Any entity or process that exists in the clinical domain and outside the biological realm. Diseases are placed under biological entities
• Device - A thing made or adapted for a particular purpose, especially a piece of mechanical or electronic equipment
• InformationContentEntity - a piece of information that typically describes some piece of biology or is used as support.
• Occurrent - A processual entity
• OntologyClass - a concept or class in an ontology, vocabulary or thesaurus
• PlanetaryEntity - Any entity or process that exists at the level of the whole planet

Referenced by class

• NamedThing affects _0..* NamedThing
• NamedThing affects risk for _0..* NamedThing
• NamedThing causes _0..* NamedThing
• NamedThing coexists with _0..* NamedThing
• NamedThing colocalizes with _0..* NamedThing
• NamedThing contributes to _0..* NamedThing
• NamedThing derives from _0..* NamedThing
• NamedThing derives into _0..* NamedThing
• NamedThing disrupts _0..* NamedThing
• NamedThing filler _OPT NamedThing
• Occurrent has input _0..* NamedThing
• NamedThing has part _0..* NamedThing
• Occurrent has participant _0..* NamedThing
• NamedThing homologous to _0..* NamedThing
• NamedThing interacts with _0..* NamedThing
• NamedThing located in _0..* NamedThing
• NamedThing location of _0..* NamedThing
• NamedThing model of _0..* NamedThing
• ModelToDiseaseMixin subject _REQ NamedThing
• NamedThing negatively regulates _0..* NamedThing
• Association object _REQ NamedThing
• NamedThing occurs in _0..* NamedThing
• NamedThing orthologous to _0..* NamedThing
• NamedThing overlaps _0..* NamedThing
• NamedThing paralogous to _0..* NamedThing
• NamedThing part of _0..* NamedThing
• NamedThing physically interacts with _0..* NamedThing
• NamedThing positively regulates _0..* NamedThing
• NamedThing predisposes _0..* NamedThing
• NamedThing prevents _0..* NamedThing
• NamedThing produces _0..* NamedThing
• NamedThing regulates _0..* NamedThing
• NamedThing related to _0..* NamedThing
• NamedThing same as _0..* NamedThing
• Association subject _REQ NamedThing
• DiseaseOrPhenotypicFeature treated by _0..* NamedThing
• VariantToDiseaseAssociation object _REQ NamedThing
• VariantToDiseaseAssociation subject _REQ NamedThing
• NamedThing xenologous to _0..* NamedThing

Attributes

Own

• category _1..*
  • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag
  • range: IriType
  • in subsets: (translator_minimal)
• id _REQ
  • Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
  • range: IdentifierType
  • in subsets: (translator_minimal)
• name _REQ
  • Description: A human-readable name for a thing
  • range: LabelType
  • in subsets: (translator_minimal)

Domain for slot:

• actively involved in _0..*
  • Description: holds between a continuant and a process or function, where the continuant actively contributes to part or all of the process or function it realizes
  • range: Occurrent
  • in subsets: (translator_minimal)
• affects _0..*
  • Description: describes an entity that has a direct affect on the state or quality of another existing entity. Use of the ‘affects’ predicate implies that the affected entity already exists, unlike predicates such as ‘affects risk for’ and ‘prevents, where the outcome is something that may or may not come to be.
  • range: NamedThing
  • in subsets: (translator_minimal)
• affects risk for _0..*
  • Description: holds between two entities where exposure to one entity alters the chance of developing the other
  • range: NamedThing
  • in subsets: (translator_minimal)
• aggregate statistic _OPT
  • range: String
• capable of _0..*
  • Description: holds between a continuant and process or function, where the continuant alone has the ability to carry out the process or function.
  • range: Occurrent
  • in subsets: (translator_minimal)
• category _1..*
  • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag
  • range: IriType
  • in subsets: (translator_minimal)
• causes _0..*
  • Description: holds between two entities where the occurrence, existence, or activity of one causes the occurrence or generation of the other
  • range: NamedThing
  • in subsets: (translator_minimal)
• coexists with _0..*
  • Description: holds between two entities that are co-located in the same aggregate object, process, or spatio-temporal region
  • range: NamedThing
  • in subsets: (translator_minimal)
• colocalizes with _0..*
  • Description: holds between two entities that are observed to be located in the same place.
  • range: NamedThing
  • in subsets: (translator_minimal)
• contributes to _0..*
  • Description: holds between two entities where the occurrence, existence, or activity of one causes or contributes to the occurrence or generation of the other
  • range: NamedThing
  • in subsets: (translator_minimal)
• creation date _OPT
  • Description: date on which thing was created. This can be applied to nodes or edges
  • range: Date
• derives from _0..*
  • Description: holds between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
  • range: NamedThing
  • in subsets: (translator_minimal)
• derives into _0..*
  • Description: holds between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
  • range: NamedThing
  • in subsets: (translator_minimal)
• description _OPT
  • Description: a human-readable description of a thing
  • range: NarrativeText
  • in subsets: (translator_minimal)
• disrupts _0..*
  • Description: describes a relationship where one entity degrades or interferes with the structure, function, or occurrence of another.
  • range: NamedThing
  • in subsets: (translator_minimal)
• filler _OPT
  • Description: The value in a property-value tuple
  • range: NamedThing
• full name _OPT
  • Description: a long-form human readable name for a thing
  • range: LabelType
• has chemical formula _OPT
  • Description: description of chemical compound based on element symbols
  • range: ChemicalFormulaValue
• has molecular consequence _0..*
  • Description: connects a sequence variant to a class describing the molecular consequence. E.g. SO:0001583
  • range: OntologyClass
• has part _0..*
  • Description: holds between wholes and their parts (material entities or processes)
  • range: NamedThing
  • in subsets: (translator_minimal)
• homologous to _0..*
  • Description: holds between two biological entities that have common evolutionary origin
  • range: NamedThing
  • in subsets: (translator_minimal)
• id _REQ
  • Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
  • range: IdentifierType
  • in subsets: (translator_minimal)
• interacts with _0..*
  • Description: holds between any two entities that directly or indirectly interact with each other
  • range: NamedThing
  • in subsets: (translator_minimal)
• interbase coordinate _OPT
  • Description: TODO
  • range: String
• iri _OPT
  • Description: An IRI for the node. This is determined by the id using expansion rules.
  • range: IriType
  • in subsets: (translator_minimal)
• located in _0..*
  • Description: holds between a material entity and a material entity or site within which it is located (but of which it is not considered a part)
  • range: NamedThing
  • in subsets: (translator_minimal)
• location of _0..*
  • Description: holds between material entity or site and a material entity that is located within it (but not considered a part of it)
  • range: NamedThing
  • in subsets: (translator_minimal)
• manifestation of _0..*
  • Description: used in SemMedDB for linking things like dysfunctions and processes to some disease or syndrome
  • range: Disease
  • in subsets: (translator_minimal)
• model of _0..*
  • Description: holds between an entity and some other entity it approximates for purposes of scientific study, in virtue of its exibiting similar features of the studied entity.
  • range: NamedThing
  • in subsets: (translator_minimal)
• name _REQ
  • Description: A human-readable name for a thing
  • range: LabelType
  • in subsets: (translator_minimal)
• negatively regulates _0..*
  • range: NamedThing
• node property _OPT
  • Description: A grouping for any property that holds between a node and a value
  • range: String
• occurs in _0..*
  • Description: holds between a process and a material entity or site within which the process occurs
  • range: NamedThing
  • in subsets: (translator_minimal)
• orthologous to _0..*
  • Description: a homology relationship between entities (typically genes) that diverged after a speciation event.
  • range: NamedThing
  • in subsets: (translator_minimal)
• overlaps _0..*
  • Description: holds between entties that overlap in their extents (materials or processes)
  • range: NamedThing
  • in subsets: (translator_minimal)
• paralogous to _0..*
  • Description: a homology relationship that holds between entities (typically genes) that diverged after a duplication event.
  • range: NamedThing
  • in subsets: (translator_minimal)
• part of _0..*
  • Description: holds between parts and wholes (material entities or processes)
  • range: NamedThing
  • in subsets: (translator_minimal)
• participates in _0..*
  • Description: holds between a continuant and a process, where the continuant is somehow involved in the process
  • range: Occurrent
  • in subsets: (translator_minimal)
• physically interacts with _0..*
  • Description: holds between two entities that make physical contact as part of some interaction
  • range: NamedThing
  • in subsets: (translator_minimal)
• positively regulates _0..*
  • range: NamedThing
• predisposes _0..*
  • Description: holds between two entities where exposure to one entity increases the chance of developing the other
  • range: NamedThing
  • in subsets: (translator_minimal)
• prevents _0..*
  • Description: holds between an entity whose application or use reduces the likelihood of a potential outcome. Typically used to associate a chemical substance, exposure, activity, or medical intervention that can prevent the onset a disease or phenotypic feature.
  • range: NamedThing
  • in subsets: (translator_minimal)
• produces _0..*
  • Description: holds between a material entity and a product that is generated through the intentional actions or functioning of the material entity
  • range: NamedThing
  • in subsets: (translator_minimal)
• regulates _0..*
  • range: NamedThing
• related to _0..*
  • Description: A relationship that is asserted between two named things
  • range: NamedThing
• same as _0..*
  • Description: holds between two entities that are considered equivalent to each other
  • range: NamedThing
  • in subsets: (translator_minimal)
• synonym _0..*
  • Description: Alternate human-readable names for a thing
  • range: LabelType
  • in subsets: (translator_minimal)
• systematic synonym _0..*
  • Description: more commonly used for gene symbols in yeast
  • range: LabelType
• update date _OPT
  • Description: date on which thing was updated. This can be applied to nodes or edges
  • range: Date
• xenologous to _0..*
  • Description: a homology relationship characterized by an interspecies (horizontal) transfer since the common ancestor.
  • range: NamedThing
  • in subsets: (translator_minimal)