Class: NamedThing
a databased entity or concept/class
URI: biolink:NamedThing
Parents
- is_a: Entity - Root Biolink Model class for all things and informational relationships, real or imagined.
Children
- Activity - An activity is something that occurs over a period of time and acts upon or with entities; it may include consuming, processing, transforming, modifying, relocating, using, or generating entities.
- AdministrativeEntity
- Attribute - A property or characteristic of an entity. For example, an apple may have properties such as color, shape, age, crispiness. An environmental sample may have attributes such as depth, lat, long, material.
- BiologicalEntity
- ChemicalEntity - A chemical entity is a physical entity that pertains to chemistry or biochemistry.
- ClinicalEntity - Any entity or process that exists in the clinical domain and outside the biological realm. Diseases are placed under biological entities
- Device - A thing made or adapted for a particular purpose, especially a piece of mechanical or electronic equipment
- Event - Something that happens at a given place and time.
- ExposureEvent - A (possibly time bounded) incidence of a feature of the environment of an organism that influences one or more phenotypic features of that organism, potentially mediated by genes
- InformationContentEntity - a piece of information that typically describes some topic of discourse or is used as support.
- OrganismTaxon - A classification of a set of organisms. Example instances: NCBITaxon:9606 (Homo sapiens), NCBITaxon:2 (Bacteria). Can also be used to represent strains or subspecies.
- Phenomenon - a fact or situation that is observed to exist or happen, especially one whose cause or explanation is in question
- PhysicalEntity - An entity that has material reality (a.k.a. physical essence).
- PlanetaryEntity - Any entity or process that exists at the level of the whole planet
- Procedure - A series of actions conducted in a certain order or manner
- Treatment - A treatment is targeted at a disease or phenotype and may involve multiple drug ‘exposures’, medical devices and/or procedures
Referenced by class
- NamedThing affected by 0..* NamedThing
- NamedThing affects 0..* NamedThing
- NamedThing affects expression in 0..* NamedThing
- NamedThing affects risk for 0..* NamedThing
- NamedThing assesses 0..1 NamedThing
- NamedThing associated with 0..* NamedThing
- NamedThing broad match 0..* NamedThing
- NamedThing caused by 0..* NamedThing
- NamedThing causes 0..* NamedThing
- ChemicalEntityAssessesNamedThingAssociation object 1..1 NamedThing
- NamedThing chemically similar to 0..* NamedThing
- NamedThing close match 0..* NamedThing
- NamedThing coexists with 0..* NamedThing
- NamedThing colocalizes with 0..* NamedThing
- NamedThing completed by 0..* NamedThing
- NamedThing composed primarily of 0..* NamedThing
- NamedThing contains process 0..* NamedThing
- NamedThing contributes to 0..* NamedThing
- NamedThing contribution from 0..* NamedThing
- NamedThing correlated with 0..* NamedThing
- NamedThing decreased amount in 0..* NamedThing
- NamedThing decreases amount or activity of 0..* NamedThing
- NamedThing derives from 0..* NamedThing
- NamedThing derives into 0..* NamedThing
- NamedThing develops from 0..* NamedThing
- NamedThing develops into 0..* NamedThing
- NamedThing disease has basis in 0..* NamedThing
- NamedThing disease has location 0..* NamedThing
- NamedThing disrupted by 0..* NamedThing
- NamedThing disrupts 0..* NamedThing
- NamedThing exact match 0..* NamedThing
- NucleicAcidEntity expression affected by 0..* NamedThing
- NucleicAcidEntity expression decreased by 0..* NamedThing
- NucleicAcidEntity expression increased by 0..* NamedThing
- NamedThing genetic association 0..* NamedThing
- GenotypeToDiseaseAssociation object 1..1 NamedThing
- GenotypeToDiseaseAssociation subject 1..1 NamedThing
- Occurrent has catalyst 0..* NamedThing
- NamedThing has completed 0..* NamedThing
- NamedThing has decreased amount 0..* NamedThing
- NamedThing has increased amount 0..* NamedThing
- Disease has manifestation 0..* NamedThing
- NamedThing has not completed 0..* NamedThing
- NamedThing has part 0..* NamedThing
- Occurrent has participant 0..* NamedThing
- NamedThing has plasma membrane part 0..* NamedThing
- NamedThing has predisposing factor 0..1 NamedThing
- Attribute has qualitative value 0..1 NamedThing
- NamedThing has real world evidence of association with 0..* NamedThing
- Occurrent has substrate 0..* NamedThing
- NamedThing has variant part 0..* NamedThing
- NamedThing homologous to 0..* NamedThing
- NamedThing in linkage disequilibrium with 0..* NamedThing
- NamedThing increased amount of 0..* NamedThing
- NamedThing increases amount or activity of 0..* NamedThing
- InformationContentEntityToNamedThingAssociation object 1..1 NamedThing
- InformationContentEntityToNamedThingAssociation subject 1..1 NamedThing
- NamedThing interacts with 0..* NamedThing
- NamedThing is assessed by 0..1 NamedThing
- OntologyClass is molecular consequence of 0..* NamedThing
- NamedThing lacks part 0..* NamedThing
- NamedThing located in 0..* NamedThing
- NamedThing location of 0..* NamedThing
- MacromolecularMachineToEntityAssociationMixin subject 1..1 NamedThing
- MaterialSampleDerivationAssociation object 1..1 NamedThing
- NamedThing mentioned by 0..* NamedThing
- NamedThing mentions 0..* NamedThing
- NamedThing missing from 0..* NamedThing
- NamedThing model of 0..* NamedThing
- ModelToDiseaseAssociationMixin subject 1..1 NamedThing
- NamedThing models 0..* NamedThing
- NamedThing narrow match 0..* NamedThing
- NamedThing negatively correlated with 0..* NamedThing
- NamedThing not completed by 0..* NamedThing
- Association object 1..1 NamedThing
- NamedThing occurs in 0..* NamedThing
- NamedThing occurs in disease 0..* NamedThing
- NamedThing occurs together in literature with 0..* NamedThing
- NamedThing opposite of 0..* NamedThing
- OrganismTaxonToEnvironmentAssociation object 1..1 NamedThing
- NamedThing orthologous to 0..* NamedThing
- NamedThing overlaps 0..* NamedThing
- NamedThing paralogous to 0..* NamedThing
- NamedThing part of 0..* NamedThing
- NamedThing physically interacts with 0..* NamedThing
- NamedThing plasma membrane part of 0..* NamedThing
- NamedThing positively correlated with 0..* NamedThing
- NamedThing predisposes 0..* NamedThing
- NamedThing prevented by 0..* NamedThing
- NamedThing prevents 0..* NamedThing
- NamedThing produced by 0..* NamedThing
- NamedThing produces 0..* NamedThing
- NamedThing related condition 0..* NamedThing
- NamedThing related to 0..* NamedThing
- NamedThing related to at concept level 0..* NamedThing
- NamedThing related to at instance level 0..* NamedThing
- ChemicalEntity resistance associated with 0..* NamedThing
- NamedThing risk affected by 0..* NamedThing
- NamedThing same as 0..* NamedThing
- ChemicalEntity sensitivity associated with 0..* NamedThing
- NamedThing similar to 0..* NamedThing
- Association subject 1..1 NamedThing
- NamedThing variant part of 0..* NamedThing
- VariantToDiseaseAssociation object 1..1 NamedThing
- VariantToDiseaseAssociation subject 1..1 NamedThing
- NamedThing xenologous to 0..* NamedThing
Attributes
Own
- category 0..*
- Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
- In a neo4j database this MAY correspond to the neo4j label tag.
- In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values
biolink:Protein
,biolink:GeneProduct
,biolink:MolecularEntity
, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence featuref
may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}- Range: CategoryType
- in subsets: (translator_minimal)
- provided by 0..*
- Description: The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph.
- Range: String
Inherited from entity:
- id 1..1
- Description: A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI
- Range: String
- in subsets: (translator_minimal)
- iri 0..1
- Description: An IRI for an entity. This is determined by the id using expansion rules.
- Range: IriType
- in subsets: (translator_minimal,samples)
- category 0..*
- Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
- In a neo4j database this MAY correspond to the neo4j label tag.
- In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values
biolink:Protein
,biolink:GeneProduct
,biolink:MolecularEntity
, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence featuref
may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}- Range: CategoryType
- in subsets: (translator_minimal)
- type 0..1
- Range: String
- description 0..1
- Description: a human-readable description of an entity
- Range: NarrativeText
- in subsets: (translator_minimal)
- source 0..1
- Range: String
- has attribute 0..*
- Description: connects any entity to an attribute
- Range: Attribute
- in subsets: (samples)
Inherited from gene product mixin:
- xref 0..*
- Description: Alternate CURIEs for a thing
- Range: Uriorcurie
- in subsets: (translator_minimal)
Inherited from macromolecular machine mixin:
- name 0..1
- Description: A human-readable name for an attribute or entity.
- Range: LabelType
- in subsets: (translator_minimal,samples)
Domain for slot:
- category 0..*
- Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
- In a neo4j database this MAY correspond to the neo4j label tag.
- In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values
biolink:Protein
,biolink:GeneProduct
,biolink:MolecularEntity
, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence featuref
may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}- Range: CategoryType
- in subsets: (translator_minimal)
- provided by 0..*
- Description: The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph.
- Range: String
- xref 0..*
- Description: Alternate CURIEs for a thing
- Range: Uriorcurie
- in subsets: (translator_minimal)
Other properties
Exact Mappings: | BFO:0000001 | |
WIKIDATA:Q35120 | ||
UMLSSG:OBJC | ||
STY:T071 | ||
dcid:Thing |