Type: Gene

URI: biolink:Gene

SO:0000704

SIO:010035

WD:Q7187

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Identifier prefixes

• NCBIGene
• ENSEMBL
• HGNC
• MGI
• ZFIN
• dictyBase
• WB
• SGD
• PomBase
• IUPHAR

Parents

• is_a: GeneOrGeneProduct - a union of genes or gene products. Frequently an identifier for one will be used as proxy for another

Referenced by class

• GeneToGeneProductRelationship gene to gene product relationship➞subject _REQ Gene
• Gene genetically interacts with _0..* Gene
• GenotypeToGeneAssociation genotype to gene association➞object _REQ Gene
• NamedThing has gene _OPT Gene
• SequenceVariant sequence variant➞has gene _0..* Gene
• TranscriptToGeneRelationship transcript to gene relationship➞object _REQ Gene

Attributes

Inherited from macromolecular machine:

• macromolecular machine➞name _REQ
  • range: SymbolType
  • inherited from: MacromolecularMachine

Inherited from named thing:

• id _REQ
  • Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
  • range: IdentifierType
  • inherited from: NamedThing
  • in subsets: (translator_minimal)
• name _REQ
  • Description: A human-readable name for a thing
  • range: LabelType
  • inherited from: NamedThing
  • in subsets: (translator_minimal)
• category _1..*
  • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag
  • range: IriType
  • inherited from: NamedThing
  • in subsets: (translator_minimal)

Inherited from thing with taxon:

• in taxon _0..*
  • Description: connects a thing to a class representing a taxon
  • range: OrganismTaxon
  • inherited from: ThingWithTaxon
  • in subsets: (translator_minimal)

Domain for slot:

• gene associated with condition _0..*
  • Description: holds between a gene and a disease or phenotypic feature that the gene or its alleles/products may influence, contribute to, or correlate with
  • range: DiseaseOrPhenotypicFeature
  • in subsets: (translator_minimal)
• genetically interacts with _0..*
  • Description: holds between two genes whose phenotypic effects are dependent on each other in some way - such that their combined phenotypic effects are the result of some interaction between the activity of their gene products. Examples include epistasis and synthetic lethality.
  • range: Gene
  • in subsets: (translator_minimal)
• has gene product _0..*
  • Description: holds between a gene and a transcribed and/or translated product generated from it
  • range: GeneProduct
  • in subsets: (translator_minimal)

Other properties