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Class: GeneOrGeneProduct

Description: A union of gene loci or gene products. Frequently an identifier for one will be used as proxy for another
classDiagram class GeneOrGeneProduct MacromolecularMachineMixin <|-- GeneOrGeneProduct GeneOrGeneProduct <|-- Gene GeneOrGeneProduct <|-- GeneProductMixin GeneOrGeneProduct : name

Inheritance

Slots

Name Cardinality and Range Inheritance Examples
name:
genes are typically designated by a short symbol and a full name. We map the symbol to the default display name and use an additional slot for full name
0..1
SymbolType
MacromolecularMachineMixin

Mixin Usage

mixed into description
Gene A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene locus may include regulatory regions, transcribed regions and/or other functional sequence regions.

Usages

used by used in type used
GeneToGeneAssociation subject range GeneOrGeneProduct
GeneToGeneAssociation object range GeneOrGeneProduct
GeneToGeneHomologyAssociation subject range GeneOrGeneProduct
GeneToGeneHomologyAssociation object range GeneOrGeneProduct
GeneToGeneCoexpressionAssociation subject range GeneOrGeneProduct
GeneToGeneCoexpressionAssociation object range GeneOrGeneProduct
PairwiseGeneToGeneInteraction subject range GeneOrGeneProduct
PairwiseGeneToGeneInteraction object range GeneOrGeneProduct
ReactionToCatalystAssociation object range GeneOrGeneProduct
GeneToPathwayAssociation subject range GeneOrGeneProduct
ChemicalGeneInteractionAssociation object range GeneOrGeneProduct
ChemicalAffectsGeneAssociation object range GeneOrGeneProduct
GeneAffectsChemicalAssociation subject range GeneOrGeneProduct
DrugToGeneAssociation object range GeneOrGeneProduct
GeneToEntityAssociationMixin subject range GeneOrGeneProduct
GeneToDiseaseOrPhenotypicFeatureAssociation subject range GeneOrGeneProduct
GeneToPhenotypicFeatureAssociation subject range GeneOrGeneProduct
GeneToDiseaseAssociation subject range GeneOrGeneProduct
CausalGeneToDiseaseAssociation subject range GeneOrGeneProduct
CorrelatedGeneToDiseaseAssociation subject range GeneOrGeneProduct
DruggableGeneToDiseaseAssociation subject range GeneOrGeneProduct
GeneAsAModelOfDiseaseAssociation subject range GeneOrGeneProduct
GeneHasVariantThatContributesToDiseaseAssociation subject range GeneOrGeneProduct
GeneToExpressionSiteAssociation subject range GeneOrGeneProduct
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation object range GeneOrGeneProduct

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes, ordered with the most preferred first:

ID Prefix Usage
CHEMBL.TARGET GeneOrGeneProduct
IUPHAR.FAMILY GeneOrGeneProduct

LinkML Source

name: gene or gene product
id_prefixes:
- CHEMBL.TARGET
- IUPHAR.FAMILY
description: A union of gene loci or gene products. Frequently an identifier for one
  will be used as proxy for another
from_schema: https://w3id.org/biolink/biolink-model
is_a: macromolecular machine mixin
mixin: true