Slot: aspect_qualifier (Abstract)
Description: Composes with the core concept to describe new concepts of a different ontological type. e.g. a process in which the core concept participates, a function/activity/role held by the core concept, or a characteristic/quality that inheres in the core concept. The purpose of the aspect slot is to indicate what aspect is being affected in an 'affects' association.
Notes: for good examples of aspects in the gene-> chemical space, please see the GeneOrGeneProductOrChemicalEntityAspectEnum (below) which lists many aspects that can be used to qualify the gene making the full subject a different ontological type. the qualifier ‘expression’ combines with a core concept of ‘Gene X’ to express the composed concept ‘expression of Gene X’ (Gene → Biological Process) the qualifier ‘exposure’ combines with a core concept of ‘Chemical X’ to express the composed concept ‘exposure to Chemical X’ (Chemical → Exposure Process) the qualifier ‘activity’ combines with a core concept of ‘PPARG’ to express the concept ‘activity of PPARG’ (Gene → function/activity) the qualifier ‘emergency Department Visit’ combines with a core concept of ‘Disease X’ to express the concept ‘Emergency Department visits for Disease X’ (Disease → Clinical Event) the qualifier ‘infection’ combines with a core concept of ‘Giardia’ to express the concept ‘Infection with Giardia’ (Taxon → Biological / Pathological Process) the qualifier ‘severity’ combines with a core concept of ‘DILI’ to express the concept ‘the severity level of DILI’ (Disease → (intrinsic) Characteristic/Quality) the qualifier ‘abundance’ combines with a core concept of ‘BRCA2’ to express the concept ‘abundance of BRCA2’ (Gene → (extrinsic) characteristic/quality)
Notes: for good examples of aspects in the gene-> chemical space, please see the GeneOrGeneProductOrChemicalEntityAspectEnum (below) which lists many aspects that can be used to qualify the gene making the full subject a different ontological type. the qualifier ‘expression’ combines with a core concept of ‘Gene X’ to express the composed concept ‘expression of Gene X’ (Gene → Biological Process) the qualifier ‘exposure’ combines with a core concept of ‘Chemical X’ to express the composed concept ‘exposure to Chemical X’ (Chemical → Exposure Process) the qualifier ‘activity’ combines with a core concept of ‘PPARG’ to express the concept ‘activity of PPARG’ (Gene → function/activity) the qualifier ‘emergency Department Visit’ combines with a core concept of ‘Disease X’ to express the concept ‘Emergency Department visits for Disease X’ (Disease → Clinical Event) the qualifier ‘infection’ combines with a core concept of ‘Giardia’ to express the concept ‘Infection with Giardia’ (Taxon → Biological / Pathological Process) the qualifier ‘severity’ combines with a core concept of ‘DILI’ to express the concept ‘the severity level of DILI’ (Disease → (intrinsic) Characteristic/Quality) the qualifier ‘abundance’ combines with a core concept of ‘BRCA2’ to express the concept ‘abundance of BRCA2’ (Gene → (extrinsic) characteristic/quality)
Domain: Association
Range: String
Inheritance
- association_slot
- qualifier
- aspect_qualifier
- qualifier
Example values
| Slot Name | Value |
|---|---|
| aspect_qualifier | stability |
| aspect_qualifier | abundance |
| aspect_qualifier | expression |
| aspect_qualifier | exposure |
LinkML Source
name: aspect qualifier
description: Composes with the core concept to describe new concepts of a different
ontological type. e.g. a process in which the core concept participates, a function/activity/role
held by the core concept, or a characteristic/quality that inheres in the core concept. The
purpose of the aspect slot is to indicate what aspect is being affected in an 'affects'
association.
notes:
- for good examples of aspects in the gene-> chemical space, please see the GeneOrGeneProductOrChemicalEntityAspectEnum
(below) which lists many aspects that can be used to qualify the gene making the
full subject a different ontological type. the qualifier ‘expression’ combines with
a core concept of ‘Gene X’ to express the composed concept ‘expression of Gene X’
(Gene → Biological Process) the qualifier ‘exposure’ combines with a core concept
of ‘Chemical X’ to express the composed concept ‘exposure to Chemical X’ (Chemical
→ Exposure Process) the qualifier ‘activity’ combines with a core concept of ‘PPARG’
to express the concept ‘activity of PPARG’ (Gene → function/activity) the qualifier
‘emergency Department Visit’ combines with a core concept of ‘Disease X’ to express
the concept ‘Emergency Department visits for Disease X’ (Disease → Clinical Event)
the qualifier ‘infection’ combines with a core concept of ‘Giardia’ to express the
concept ‘Infection with Giardia’ (Taxon → Biological / Pathological Process) the
qualifier ‘severity’ combines with a core concept of ‘DILI’ to express the concept
‘the severity level of DILI’ (Disease → (intrinsic) Characteristic/Quality) the
qualifier ‘abundance’ combines with a core concept of ‘BRCA2’ to express the concept
‘abundance of BRCA2’ (Gene → (extrinsic) characteristic/quality)
examples:
- value: stability
- value: abundance
- value: expression
- value: exposure
in_subset:
- translator_minimal
from_schema: https://w3id.org/biolink/biolink-model
is_a: qualifier
abstract: true
domain: association
alias: aspect_qualifier
range: string