Skip to content

Class: Treatment

Description: A treatment is targeted at a disease or phenotype and may involve multiple drug 'exposures', medical devices and/or procedures

Aliases: medical action, medical intervention

classDiagram class Treatment ExposureEvent <|-- Treatment ChemicalOrDrugOrTreatment <|-- Treatment NamedThing <|-- Treatment Treatment : category Treatment : deprecated Treatment : description Treatment : full_name Treatment : has_attribute Treatment --|> Attribute : has_attribute Treatment : has_device Treatment --|> Device : has_device Treatment : has_drug Treatment --|> Drug : has_drug Treatment : has_procedure Treatment --|> Procedure : has_procedure Treatment : id Treatment : iri Treatment : name Treatment : provided_by Treatment : synonym Treatment : timepoint Treatment : type Treatment : xref

Inheritance

Slots

Name Cardinality and Range Inheritance Examples
has_drug:
connects an entity to one or more drugs
*
Drug		 direct
has_device:
connects an entity to one or more (medical) devices 		*
Device		 direct
has_procedure:
connects an entity to one or more (medical) procedures 		*
Procedure		 direct
timepoint:
a point in time 		0..1
TimeType		 ExposureEvent
provided_by:
The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph. 		*
String		 NamedThing
xref:
A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references. 		*
Uriorcurie		 NamedThing
full_name:
a long-form human readable name for a thing 		0..1
LabelType		 NamedThing
synonym:
Alternate human-readable names for a thing 		*
LabelType		 NamedThing
id:
A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI 		1
String		 OntologyClass, Entity
iri:
An IRI for an entity. This is determined by the id using expansion rules. 		0..1
IriType		 Entity
category:
Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing} 		1..*
Uriorcurie		 Entity
type:
None 		*
String		 Entity
name:
A human-readable name for an attribute or entity. 		0..1
LabelType		 Entity
description:
a human-readable description of an entity 		0..1
NarrativeText		 Entity
has_attribute:
connects any entity to an attribute 		*
Attribute		 Entity
deprecated:
A boolean flag indicating that an entity is no longer considered current or valid. 		0..1
Boolean		 Entity

Usages

used by used in type used
SequenceVariantModulatesTreatmentAssociation object range Treatment

LinkML Source

name: treatment
description: A treatment is targeted at a disease or phenotype and may involve multiple
  drug 'exposures', medical devices and/or procedures
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- medical action
- medical intervention
exact_mappings:
- OGMS:0000090
- SIO:001398
broad_mappings:
- MAXO:0000058
is_a: named thing
mixins:
- exposure event
- chemical or drug or treatment
slots:
- has drug
- has device
- has procedure