Class: ThingWithTaxon
Description: A mixin that can be used on any entity that can be taxonomically classified. This includes individual organisms; genes, their products and other molecular entities; body parts; biological processes
classDiagram
class ThingWithTaxon
ThingWithTaxon <|-- BiologicalEntity
ThingWithTaxon <|-- NucleicAcidEntity
ThingWithTaxon <|-- GenomicBackgroundExposure
ThingWithTaxon : in_taxon
ThingWithTaxon --|> OrganismTaxon : in_taxon
ThingWithTaxon : in_taxon_label
Slots
| Name | Cardinality and Range | Inheritance | Examples |
|---|---|---|---|
| in_taxon: connects an entity to its taxonomic classification. Only certain kinds of entities can be taxonomically classified; see 'thing with taxon' |
* OrganismTaxon |
direct | |
| in_taxon_label: The human readable scientific name for the taxon of the entity. |
0..1 LabelType |
direct |
Mixin Usage
| mixed into | description |
|---|---|
| BiologicalEntity | None |
| NucleicAcidEntity | A nucleic acid entity is a molecular entity characterized by availability in gene databases of nucleotide-based sequence representations of its precise sequence; for convenience of representation, partial sequences of various kinds are included. |
| GenomicBackgroundExposure | A genomic background exposure is where an individual's specific genomic background of genes, sequence variants or other pre-existing genomic conditions constitute a kind of 'exposure' to the organism, leading to or influencing an outcome. |
Usages
LinkML Source
name: thing with taxon
description: A mixin that can be used on any entity that can be taxonomically classified.
This includes individual organisms; genes, their products and other molecular entities;
body parts; biological processes
from_schema: https://w3id.org/biolink/biolink-model
mixin: true
slots:
- in taxon
- in taxon label