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Class: StudyResult (Abstract)

Description: A collection of data items from a study that are about a particular study subject or experimental unit (the 'focus' of the Result) - optionally with context/provenance metadata that may be relevant to the interpretation of this data as evidence.

Notes: The data/metadata included in a Study Result object are typically a subset of data from a larger study data set, that are selected by a curator because they may be useful as evidence for deriving knowledge about a specific focus of the study. The notion of a 'study' here is defined broadly to include any research activity at any scale that is aimed at generating knowledge or hypotheses. This may include a single assay or computational analyses, or a larger scale clinical trial or experimental research investigation.

classDiagram class StudyResult InformationContentEntity <|-- StudyResult StudyResult <|-- ConceptCountAnalysisResult StudyResult <|-- ObservedExpectedFrequencyAnalysisResult StudyResult <|-- RelativeFrequencyAnalysisResult StudyResult <|-- ChiSquaredAnalysisResult StudyResult <|-- LogOddsAnalysisResult StudyResult <|-- TextMiningStudyResult StudyResult <|-- IceesStudyResult StudyResult : category StudyResult : creation_date StudyResult : deprecated StudyResult : description StudyResult : equivalent_identifiers StudyResult : format StudyResult : full_name StudyResult : has_attribute StudyResult --|> Attribute : has_attribute StudyResult : id StudyResult : information_content StudyResult : iri StudyResult : license StudyResult : name StudyResult : provided_by StudyResult : rights StudyResult : synonym StudyResult : type StudyResult : xref

Inheritance

Slots

Name Cardinality and Range Inheritance Examples
license:
None
0..1
String		 InformationContentEntity
rights:
None 		0..1
String		 InformationContentEntity
format:
None 		0..1
String		 InformationContentEntity
creation_date:
date on which an entity was created. This can be applied to nodes or edges 		0..1
Date		 InformationContentEntity
provided_by:
The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph. 		*
String		 NamedThing
xref:
A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references. 		*
Uriorcurie		 NamedThing
full_name:
a long-form human readable name for a thing 		0..1
LabelType		 NamedThing
synonym:
Alternate human-readable names for a thing 		*
LabelType		 NamedThing
information_content:
Information content (IC) value for a term, primarily from Automats. 		0..1
Float		 NamedThing
equivalent_identifiers:
A set of identifiers that are considered equivalent to the primary identifier of the entity. This attribute is used to represent a collection of identifiers that are considered equivalent to the primary identifier of an entity. These equivalent identifiers may come from different databases, ontologies, or naming conventions, but they all refer to the same underlying concept or entity. This attribute is particularly useful in data integration and interoperability scenarios, where it is important to recognize and link different representations of the same entity across various sources. 		*
Uriorcurie		 NamedThing
id:
A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI 		1
String		 Entity
iri:
An IRI for an entity. This is determined by the id using expansion rules. 		0..1
IriType		 Entity
category:
Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing} 		1..*
Uriorcurie		 Entity
type:
None 		*
String		 Entity
name:
A human-readable name for an attribute or entity. 		0..1
LabelType		 Entity
description:
a human-readable description of an entity 		0..1
NarrativeText		 Entity
has_attribute:
connects any entity to an attribute 		*
Attribute		 Entity
deprecated:
A boolean flag indicating that an entity is no longer considered current or valid. 		0..1
Boolean		 Entity

Usages

used by used in type used
Study has_study_results range StudyResult
ClinicalTrial has_study_results range StudyResult

LinkML Source

name: study result
description: A collection of data items from a study that are about a particular study
  subject or experimental unit (the 'focus' of the Result) - optionally with context/provenance
  metadata that may be relevant to the interpretation of this data as evidence.
notes:
- The data/metadata included in a Study Result object are typically a subset of data
  from a larger study data set, that are selected by a curator because they may be
  useful as evidence for deriving knowledge about a specific focus of the study. The
  notion of a 'study' here is defined broadly to include any research activity at
  any scale that is aimed at generating knowledge or hypotheses. This may include
  a single assay or computational analyses, or a larger scale clinical trial or experimental
  research investigation.
from_schema: https://w3id.org/biolink/biolink-model
is_a: information content entity
abstract: true