Class: RetrievalSource
Description: Provides information about how a particular InformationResource served as a source from which knowledge expressed in an Edge, or data used to generate this knowledge, was retrieved.
classDiagram
class RetrievalSource
InformationContentEntity <|-- RetrievalSource
RetrievalSource : category
RetrievalSource : creation_date
RetrievalSource : deprecated
RetrievalSource : description
RetrievalSource : equivalent_identifiers
RetrievalSource : format
RetrievalSource : full_name
RetrievalSource : has_attribute
RetrievalSource --|> Attribute : has_attribute
RetrievalSource : id
RetrievalSource : information_content
RetrievalSource : iri
RetrievalSource : license
RetrievalSource : name
RetrievalSource : provided_by
RetrievalSource : resource_id
RetrievalSource : resource_role
RetrievalSource --|> ResourceRoleEnum : resource_role
RetrievalSource : rights
RetrievalSource : source_record_urls
RetrievalSource : synonym
RetrievalSource : type
RetrievalSource : upstream_resource_ids
RetrievalSource : xref
Inheritance
- Entity
- NamedThing
- InformationContentEntity
- RetrievalSource
- InformationContentEntity
- NamedThing
Slots
| Name | Cardinality and Range | Inheritance | Examples |
|---|---|---|---|
| resource_id: The InformationResource that served as a source for the knowledge expressed in an Edge, or data used to generate this knowledge. |
1 Uriorcurie |
direct | |
| resource_role: The role of the InformationResource in the retrieval of the knowledge expressed in an Edge, or data used to generate this knowledge. |
1 ResourceRoleEnum |
direct | |
| upstream_resource_ids: A list of upstream InformationResources from which the resource being described directly retrieved a record of the knowledge expressed in the Edge, or data used to generate this knowledge. |
* Uriorcurie |
direct | |
| source_record_urls: One or more URLs that link to a specific web page or document provided by the InformationResource, that contains a record of the knowledge expressed in the Edge. |
* Uriorcurie |
direct | |
| xref: A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references. |
* Uriorcurie |
direct | |
| license: None |
0..1 String |
InformationContentEntity | |
| rights: None |
0..1 String |
InformationContentEntity | |
| format: None |
0..1 String |
InformationContentEntity | |
| creation_date: date on which an entity was created. This can be applied to nodes or edges |
0..1 Date |
InformationContentEntity | |
| provided_by: The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph. |
* String |
NamedThing | |
| full_name: a long-form human readable name for a thing |
0..1 LabelType |
NamedThing | |
| synonym: Alternate human-readable names for a thing |
* LabelType |
NamedThing | |
| information_content: Information content (IC) value for a term, primarily from Automats. |
0..1 Float |
NamedThing | |
| equivalent_identifiers: A set of identifiers that are considered equivalent to the primary identifier of the entity. This attribute is used to represent a collection of identifiers that are considered equivalent to the primary identifier of an entity. These equivalent identifiers may come from different databases, ontologies, or naming conventions, but they all refer to the same underlying concept or entity. This attribute is particularly useful in data integration and interoperability scenarios, where it is important to recognize and link different representations of the same entity across various sources. |
* Uriorcurie |
NamedThing | |
| id: A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI |
1 String |
Entity | |
| iri: An IRI for an entity. This is determined by the id using expansion rules. |
0..1 IriType |
Entity | |
| category: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing} |
1..* Uriorcurie |
Entity | |
| type: None |
* String |
Entity | |
| name: A human-readable name for an attribute or entity. |
0..1 LabelType |
Entity | |
| description: a human-readable description of an entity |
0..1 NarrativeText |
Entity | |
| has_attribute: connects any entity to an attribute |
* Attribute |
Entity | |
| deprecated: A boolean flag indicating that an entity is no longer considered current or valid. |
0..1 Boolean |
Entity |
Usages
LinkML Source
name: retrieval source
description: Provides information about how a particular InformationResource served
as a source from which knowledge expressed in an Edge, or data used to generate
this knowledge, was retrieved.
from_schema: https://w3id.org/biolink/biolink-model
is_a: information content entity
slots:
- resource id
- resource role
- upstream resource ids
- source record urls
- xref
slot_usage:
resource id:
name: resource id
description: The InformationResource that served as a source for the knowledge
expressed in an Edge, or data used to generate this knowledge.
required: true
resource role:
name: resource role
description: The role of the InformationResource in the retrieval of the knowledge
expressed in an Edge, or data used to generate this knowledge.
required: true
upstream resource ids:
name: upstream resource ids
description: A list of upstream InformationResources from which the resource being
described directly retrieved a record of the knowledge expressed in the Edge,
or data used to generate this knowledge.
source record urls:
name: source record urls
description: One or more URLs that link to a specific web page or document provided
by the InformationResource, that contains a record of the knowledge expressed
in the Edge.