Class: RetrievalSource
Description: Provides information about how a particular InformationResource served as a source from which knowledge expressed in an Edge, or data used to generate this knowledge, was retrieved.
classDiagram
class RetrievalSource
InformationContentEntity <|-- RetrievalSource
RetrievalSource : category
RetrievalSource : creation_date
RetrievalSource : deprecated
RetrievalSource : description
RetrievalSource : format
RetrievalSource : full_name
RetrievalSource : has_attribute
RetrievalSource --|> Attribute : has_attribute
RetrievalSource : id
RetrievalSource : iri
RetrievalSource : license
RetrievalSource : name
RetrievalSource : provided_by
RetrievalSource : resource_id
RetrievalSource : resource_role
RetrievalSource --|> ResourceRoleEnum : resource_role
RetrievalSource : rights
RetrievalSource : synonym
RetrievalSource : type
RetrievalSource : upstream_resource_ids
RetrievalSource : xref
Inheritance
- Entity
- NamedThing
- InformationContentEntity
- RetrievalSource
- InformationContentEntity
- NamedThing
Slots
| Name | Cardinality and Range | Inheritance | Examples |
|---|---|---|---|
| resource_id: The InformationResource that served as a source for the knowledge expressed in an Edge, or data used to generate this knowledge. |
1 Uriorcurie |
direct | |
| resource_role: The role of the InformationResource in the retrieval of the knowledge expressed in an Edge, or data used to generate this knowledge. |
1 ResourceRoleEnum |
direct | |
| upstream_resource_ids: The InformationResources that served as a source for the InformationResource that served as a source for the knowledge expressed in an Edge, or data used to generate this knowledge. |
0..1 Uriorcurie |
direct | |
| xref: A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references. |
* Uriorcurie |
direct | |
| license: None |
0..1 String |
InformationContentEntity | |
| rights: None |
0..1 String |
InformationContentEntity | |
| format: None |
0..1 String |
InformationContentEntity | |
| creation_date: date on which an entity was created. This can be applied to nodes or edges |
0..1 Date |
InformationContentEntity | |
| provided_by: The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph. |
* String |
NamedThing | |
| full_name: a long-form human readable name for a thing |
0..1 LabelType |
NamedThing | |
| synonym: Alternate human-readable names for a thing |
* LabelType |
NamedThing | |
| id: A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI |
1 String |
Entity | |
| iri: An IRI for an entity. This is determined by the id using expansion rules. |
0..1 IriType |
Entity | |
| category: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing} |
1..* Uriorcurie |
Entity | |
| type: None |
* String |
Entity | |
| name: A human-readable name for an attribute or entity. |
0..1 LabelType |
Entity | |
| description: a human-readable description of an entity |
0..1 NarrativeText |
Entity | |
| has_attribute: connects any entity to an attribute |
* Attribute |
Entity | |
| deprecated: A boolean flag indicating that an entity is no longer considered current or valid. |
0..1 Boolean |
Entity |
Usages
LinkML Source
name: retrieval source
description: Provides information about how a particular InformationResource served
as a source from which knowledge expressed in an Edge, or data used to generate
this knowledge, was retrieved.
from_schema: https://w3id.org/biolink/biolink-model
is_a: information content entity
slots:
- resource id
- resource role
- upstream resource ids
- xref
slot_usage:
resource id:
name: resource id
description: The InformationResource that served as a source for the knowledge
expressed in an Edge, or data used to generate this knowledge.
required: true
resource role:
name: resource role
description: The role of the InformationResource in the retrieval of the knowledge
expressed in an Edge, or data used to generate this knowledge.
required: true
upstream resource ids:
name: upstream resource ids
description: The InformationResources that served as a source for the InformationResource
that served as a source for the knowledge expressed in an Edge, or data used
to generate this knowledge.