Class: ProcessedMaterial
Description: A chemical entity (often a mixture) processed for consumption for nutritional, medical or technical use. Is a material entity that is created or changed during material processing.
classDiagram
class ProcessedMaterial
ChemicalMixture <|-- ProcessedMaterial
ProcessedMaterial : available_from
ProcessedMaterial --|> DrugAvailabilityEnum : available_from
ProcessedMaterial : category
ProcessedMaterial : deprecated
ProcessedMaterial : description
ProcessedMaterial : drug_regulatory_status_world_wide
ProcessedMaterial --|> ApprovalStatusEnum : drug_regulatory_status_world_wide
ProcessedMaterial : full_name
ProcessedMaterial : has_attribute
ProcessedMaterial --|> Attribute : has_attribute
ProcessedMaterial : has_chemical_role
ProcessedMaterial --|> ChemicalRole : has_chemical_role
ProcessedMaterial : highest_FDA_approval_status
ProcessedMaterial --|> ApprovalStatusEnum : highest_FDA_approval_status
ProcessedMaterial : id
ProcessedMaterial : iri
ProcessedMaterial : is_supplement
ProcessedMaterial : is_toxic
ProcessedMaterial : max_tolerated_dose
ProcessedMaterial : name
ProcessedMaterial : provided_by
ProcessedMaterial : routes_of_delivery
ProcessedMaterial --|> DrugDeliveryEnum : routes_of_delivery
ProcessedMaterial : synonym
ProcessedMaterial : trade_name
ProcessedMaterial : type
ProcessedMaterial : xref
Inheritance
Slots
| Name | Cardinality and Range | Inheritance | Examples |
|---|---|---|---|
| is_supplement: |
0..1 String |
ChemicalMixture | |
| highest_FDA_approval_status: Should be the highest level of FDA approval this chemical entity or device has, regardless of which disease, condition or phenotype it is currently being reviewed to treat. For specific levels of FDA approval for a specific condition, disease, phenotype, etc., see the association slot, 'clinical approval status.' |
0..1 ApprovalStatusEnum |
ChemicalMixture | |
| drug_regulatory_status_world_wide: An agglomeration of drug regulatory status worldwide. Not specific to FDA. |
0..1 ApprovalStatusEnum |
ChemicalMixture | |
| routes_of_delivery: the method or process of administering a pharmaceutical compound to achieve a therapeutic effect in humans or animals. |
* DrugDeliveryEnum |
ChemicalMixture | |
| trade_name: |
0..1 String |
ChemicalEntity | |
| available_from: |
* DrugAvailabilityEnum |
ChemicalEntity | |
| max_tolerated_dose: The highest dose of a drug or treatment that does not cause unacceptable side effects. The maximum tolerated dose is determined in clinical trials by testing increasing doses on different groups of people until the highest dose with acceptable side effects is found. Also called MTD. |
0..1 String |
ChemicalEntity | |
| is_toxic: |
0..1 Boolean |
ChemicalEntity | |
| has_chemical_role: A role is particular behaviour which a chemical entity may exhibit. |
* ChemicalRole |
ChemicalEntity | |
| provided_by: The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph. |
* String |
NamedThing | |
| xref: A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references. |
* Uriorcurie |
NamedThing | |
| full_name: a long-form human readable name for a thing |
0..1 LabelType |
NamedThing | |
| synonym: Alternate human-readable names for a thing |
* LabelType |
NamedThing | |
| id: A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI |
1 String |
Entity | |
| iri: An IRI for an entity. This is determined by the id using expansion rules. |
0..1 IriType |
Entity | |
| category: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing} |
1..* Uriorcurie |
Entity | |
| type: None |
* String |
Entity | |
| name: A human-readable name for an attribute or entity. |
0..1 LabelType |
Entity | |
| description: a human-readable description of an entity |
0..1 NarrativeText |
Entity | |
| has_attribute: connects any entity to an attribute |
* Attribute |
Entity | |
| deprecated: A boolean flag indicating that an entity is no longer considered current or valid. |
0..1 Boolean |
Entity |
Valid ID Prefixes
Instances of this class should have identifiers with one of the following prefixes, ordered with the most preferred first:
LinkML Source
name: processed material
id_prefixes:
- CHEBI
- UNII
- PUBCHEM.COMPOUND
- CHEMBL.COMPOUND
- DRUGBANK
- MESH
- CAS
- DrugCentral
- GTOPDB
- HMDB
- KEGG.COMPOUND
- PHARMGKB.DRUG
- ChemBank
- PUBCHEM.SUBSTANCE
- SIDER.DRUG
- INCHI
- INCHIKEY
- BIGG.METABOLITE
- foodb.compound
- foodb.food
- KEGG.GLYCAN
- KEGG.DRUG
- KEGG.ENVIRON
- KEGG
- UMLS
description: A chemical entity (often a mixture) processed for consumption for nutritional,
medical or technical use. Is a material entity that is created or changed during
material processing.
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- OBI:0000047
is_a: chemical mixture