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Class: NamedThing

Description: a databased entity or concept/class
classDiagram class NamedThing Entity <|-- NamedThing NamedThing <|-- Attribute NamedThing <|-- OrganismTaxon NamedThing <|-- Event NamedThing <|-- AdministrativeEntity NamedThing <|-- InformationContentEntity NamedThing <|-- PhysicalEntity NamedThing <|-- Activity NamedThing <|-- Procedure NamedThing <|-- Phenomenon NamedThing <|-- Device NamedThing <|-- DiagnosticAid NamedThing <|-- PlanetaryEntity NamedThing <|-- BiologicalEntity NamedThing <|-- ChemicalEntity NamedThing <|-- ClinicalEntity NamedThing <|-- Treatment NamedThing : category NamedThing : deprecated NamedThing : description NamedThing : full_name NamedThing : has_attribute NamedThing --|> Attribute : has_attribute NamedThing : id NamedThing : iri NamedThing : name NamedThing : provided_by NamedThing : synonym NamedThing : type NamedThing : xref

Inheritance

Slots

Name Cardinality and Range Inheritance Examples
provided_by:
The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph.
*
String
direct
xref:
A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references.
*
Uriorcurie
direct
full_name:
a long-form human readable name for a thing
0..1
LabelType
direct
synonym:
Alternate human-readable names for a thing
*
LabelType
direct
id:
A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI
1
String
Entity
iri:
An IRI for an entity. This is determined by the id using expansion rules.
0..1
IriType
Entity
category:
Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}
1..*
Uriorcurie
Entity
type:
None
*
String
Entity
name:
A human-readable name for an attribute or entity.
0..1
LabelType
Entity
description:
a human-readable description of an entity
0..1
NarrativeText
Entity
has_attribute:
connects any entity to an attribute
*
Attribute
Entity
deprecated:
A boolean flag indicating that an entity is no longer considered current or valid.
0..1
Boolean
Entity

Usages

used by used in type used
PredicateMapping exact_match domain NamedThing
PredicateMapping exact_match range NamedThing
PredicateMapping narrow_match domain NamedThing
PredicateMapping narrow_match range NamedThing
PredicateMapping broad_match domain NamedThing
PredicateMapping broad_match range NamedThing
Attribute has_qualitative_value range NamedThing
Attribute provided_by domain NamedThing
Attribute xref domain NamedThing
Attribute full_name domain NamedThing
Attribute synonym domain NamedThing
ChemicalRole has_qualitative_value range NamedThing
ChemicalRole provided_by domain NamedThing
ChemicalRole xref domain NamedThing
ChemicalRole full_name domain NamedThing
ChemicalRole synonym domain NamedThing
BiologicalSex has_qualitative_value range NamedThing
BiologicalSex provided_by domain NamedThing
BiologicalSex xref domain NamedThing
BiologicalSex full_name domain NamedThing
BiologicalSex synonym domain NamedThing
PhenotypicSex has_qualitative_value range NamedThing
PhenotypicSex provided_by domain NamedThing
PhenotypicSex xref domain NamedThing
PhenotypicSex full_name domain NamedThing
PhenotypicSex synonym domain NamedThing
GenotypicSex has_qualitative_value range NamedThing
GenotypicSex provided_by domain NamedThing
GenotypicSex xref domain NamedThing
GenotypicSex full_name domain NamedThing
GenotypicSex synonym domain NamedThing
SeverityValue has_qualitative_value range NamedThing
SeverityValue provided_by domain NamedThing
SeverityValue xref domain NamedThing
SeverityValue full_name domain NamedThing
SeverityValue synonym domain NamedThing
FrequencyQuantifier has_count domain NamedThing
FrequencyQuantifier has_total domain NamedThing
FrequencyQuantifier has_quotient domain NamedThing
FrequencyQuantifier has_percentage domain NamedThing
NamedThing provided_by domain NamedThing
NamedThing xref domain NamedThing
NamedThing full_name domain NamedThing
NamedThing synonym domain NamedThing
OrganismTaxon has_taxonomic_rank domain NamedThing
OrganismTaxon provided_by domain NamedThing
OrganismTaxon xref domain NamedThing
OrganismTaxon full_name domain NamedThing
OrganismTaxon synonym domain NamedThing
Event provided_by domain NamedThing
Event xref domain NamedThing
Event full_name domain NamedThing
Event synonym domain NamedThing
AdministrativeEntity provided_by domain NamedThing
AdministrativeEntity xref domain NamedThing
AdministrativeEntity full_name domain NamedThing
AdministrativeEntity synonym domain NamedThing
StudyResult creation_date domain NamedThing
StudyResult provided_by domain NamedThing
StudyResult xref domain NamedThing
StudyResult full_name domain NamedThing
StudyResult synonym domain NamedThing
Study provided_by domain NamedThing
Study xref domain NamedThing
Study full_name domain NamedThing
Study synonym domain NamedThing
StudyVariable creation_date domain NamedThing
StudyVariable provided_by domain NamedThing
StudyVariable xref domain NamedThing
StudyVariable full_name domain NamedThing
StudyVariable synonym domain NamedThing
CommonDataElement creation_date domain NamedThing
CommonDataElement provided_by domain NamedThing
CommonDataElement xref domain NamedThing
CommonDataElement full_name domain NamedThing
CommonDataElement synonym domain NamedThing
ConceptCountAnalysisResult creation_date domain NamedThing
ConceptCountAnalysisResult provided_by domain NamedThing
ConceptCountAnalysisResult xref domain NamedThing
ConceptCountAnalysisResult full_name domain NamedThing
ConceptCountAnalysisResult synonym domain NamedThing
ObservedExpectedFrequencyAnalysisResult creation_date domain NamedThing
ObservedExpectedFrequencyAnalysisResult provided_by domain NamedThing
ObservedExpectedFrequencyAnalysisResult xref domain NamedThing
ObservedExpectedFrequencyAnalysisResult full_name domain NamedThing
ObservedExpectedFrequencyAnalysisResult synonym domain NamedThing
RelativeFrequencyAnalysisResult creation_date domain NamedThing
RelativeFrequencyAnalysisResult provided_by domain NamedThing
RelativeFrequencyAnalysisResult xref domain NamedThing
RelativeFrequencyAnalysisResult full_name domain NamedThing
RelativeFrequencyAnalysisResult synonym domain NamedThing
TextMiningResult creation_date domain NamedThing
TextMiningResult provided_by domain NamedThing
TextMiningResult xref domain NamedThing
TextMiningResult full_name domain NamedThing
TextMiningResult synonym domain NamedThing
ChiSquaredAnalysisResult creation_date domain NamedThing
ChiSquaredAnalysisResult provided_by domain NamedThing
ChiSquaredAnalysisResult xref domain NamedThing
ChiSquaredAnalysisResult full_name domain NamedThing
ChiSquaredAnalysisResult synonym domain NamedThing
LogOddsAnalysisResult creation_date domain NamedThing
LogOddsAnalysisResult provided_by domain NamedThing
LogOddsAnalysisResult xref domain NamedThing
LogOddsAnalysisResult full_name domain NamedThing
LogOddsAnalysisResult synonym domain NamedThing
Agent address domain NamedThing
Agent provided_by domain NamedThing
Agent xref domain NamedThing
Agent full_name domain NamedThing
Agent synonym domain NamedThing
InformationContentEntity creation_date domain NamedThing
InformationContentEntity provided_by domain NamedThing
InformationContentEntity xref domain NamedThing
InformationContentEntity full_name domain NamedThing
InformationContentEntity synonym domain NamedThing
Dataset creation_date domain NamedThing
Dataset provided_by domain NamedThing
Dataset xref domain NamedThing
Dataset full_name domain NamedThing
Dataset synonym domain NamedThing
DatasetDistribution creation_date domain NamedThing
DatasetDistribution provided_by domain NamedThing
DatasetDistribution xref domain NamedThing
DatasetDistribution full_name domain NamedThing
DatasetDistribution synonym domain NamedThing
DatasetVersion creation_date domain NamedThing
DatasetVersion provided_by domain NamedThing
DatasetVersion xref domain NamedThing
DatasetVersion full_name domain NamedThing
DatasetVersion synonym domain NamedThing
DatasetSummary creation_date domain NamedThing
DatasetSummary provided_by domain NamedThing
DatasetSummary xref domain NamedThing
DatasetSummary full_name domain NamedThing
DatasetSummary synonym domain NamedThing
ConfidenceLevel creation_date domain NamedThing
ConfidenceLevel provided_by domain NamedThing
ConfidenceLevel xref domain NamedThing
ConfidenceLevel full_name domain NamedThing
ConfidenceLevel synonym domain NamedThing
EvidenceType creation_date domain NamedThing
EvidenceType provided_by domain NamedThing
EvidenceType xref domain NamedThing
EvidenceType full_name domain NamedThing
EvidenceType synonym domain NamedThing
Publication xref domain NamedThing
Publication creation_date domain NamedThing
Publication provided_by domain NamedThing
Publication full_name domain NamedThing
Publication synonym domain NamedThing
Book xref domain NamedThing
Book creation_date domain NamedThing
Book provided_by domain NamedThing
Book full_name domain NamedThing
Book synonym domain NamedThing
BookChapter xref domain NamedThing
BookChapter creation_date domain NamedThing
BookChapter provided_by domain NamedThing
BookChapter full_name domain NamedThing
BookChapter synonym domain NamedThing
Serial xref domain NamedThing
Serial creation_date domain NamedThing
Serial provided_by domain NamedThing
Serial full_name domain NamedThing
Serial synonym domain NamedThing
Article xref domain NamedThing
Article creation_date domain NamedThing
Article provided_by domain NamedThing
Article full_name domain NamedThing
Article synonym domain NamedThing
JournalArticle xref domain NamedThing
JournalArticle creation_date domain NamedThing
JournalArticle provided_by domain NamedThing
JournalArticle full_name domain NamedThing
JournalArticle synonym domain NamedThing
Patent xref domain NamedThing
Patent creation_date domain NamedThing
Patent provided_by domain NamedThing
Patent full_name domain NamedThing
Patent synonym domain NamedThing
WebPage xref domain NamedThing
WebPage creation_date domain NamedThing
WebPage provided_by domain NamedThing
WebPage full_name domain NamedThing
WebPage synonym domain NamedThing
PreprintPublication xref domain NamedThing
PreprintPublication creation_date domain NamedThing
PreprintPublication provided_by domain NamedThing
PreprintPublication full_name domain NamedThing
PreprintPublication synonym domain NamedThing
DrugLabel xref domain NamedThing
DrugLabel creation_date domain NamedThing
DrugLabel provided_by domain NamedThing
DrugLabel full_name domain NamedThing
DrugLabel synonym domain NamedThing
RetrievalSource xref domain NamedThing
RetrievalSource creation_date domain NamedThing
RetrievalSource provided_by domain NamedThing
RetrievalSource full_name domain NamedThing
RetrievalSource synonym domain NamedThing
PhysicalEntity provided_by domain NamedThing
PhysicalEntity xref domain NamedThing
PhysicalEntity full_name domain NamedThing
PhysicalEntity synonym domain NamedThing
Activity provided_by domain NamedThing
Activity xref domain NamedThing
Activity full_name domain NamedThing
Activity synonym domain NamedThing
Procedure provided_by domain NamedThing
Procedure xref domain NamedThing
Procedure full_name domain NamedThing
Procedure synonym domain NamedThing
Phenomenon provided_by domain NamedThing
Phenomenon xref domain NamedThing
Phenomenon full_name domain NamedThing
Phenomenon synonym domain NamedThing
Device provided_by domain NamedThing
Device xref domain NamedThing
Device full_name domain NamedThing
Device synonym domain NamedThing
DiagnosticAid provided_by domain NamedThing
DiagnosticAid xref domain NamedThing
DiagnosticAid full_name domain NamedThing
DiagnosticAid synonym domain NamedThing
StudyPopulation provided_by domain NamedThing
StudyPopulation xref domain NamedThing
StudyPopulation full_name domain NamedThing
StudyPopulation synonym domain NamedThing
MaterialSample provided_by domain NamedThing
MaterialSample xref domain NamedThing
MaterialSample full_name domain NamedThing
MaterialSample synonym domain NamedThing
PlanetaryEntity provided_by domain NamedThing
PlanetaryEntity xref domain NamedThing
PlanetaryEntity full_name domain NamedThing
PlanetaryEntity synonym domain NamedThing
EnvironmentalProcess provided_by domain NamedThing
EnvironmentalProcess xref domain NamedThing
EnvironmentalProcess full_name domain NamedThing
EnvironmentalProcess synonym domain NamedThing
EnvironmentalFeature provided_by domain NamedThing
EnvironmentalFeature xref domain NamedThing
EnvironmentalFeature full_name domain NamedThing
EnvironmentalFeature synonym domain NamedThing
GeographicLocation latitude domain NamedThing
GeographicLocation longitude domain NamedThing
GeographicLocation provided_by domain NamedThing
GeographicLocation xref domain NamedThing
GeographicLocation full_name domain NamedThing
GeographicLocation synonym domain NamedThing
GeographicLocationAtTime latitude domain NamedThing
GeographicLocationAtTime longitude domain NamedThing
GeographicLocationAtTime provided_by domain NamedThing
GeographicLocationAtTime xref domain NamedThing
GeographicLocationAtTime full_name domain NamedThing
GeographicLocationAtTime synonym domain NamedThing
BiologicalEntity provided_by domain NamedThing
BiologicalEntity xref domain NamedThing
BiologicalEntity full_name domain NamedThing
BiologicalEntity synonym domain NamedThing
GenomicEntity has_biological_sequence domain NamedThing
EpigenomicEntity has_biological_sequence domain NamedThing
MolecularEntity available_from domain NamedThing
MolecularEntity max_tolerated_dose domain NamedThing
MolecularEntity is_toxic domain NamedThing
MolecularEntity has_chemical_role domain NamedThing
MolecularEntity provided_by domain NamedThing
MolecularEntity xref domain NamedThing
MolecularEntity full_name domain NamedThing
MolecularEntity synonym domain NamedThing
ChemicalEntity available_from domain NamedThing
ChemicalEntity max_tolerated_dose domain NamedThing
ChemicalEntity is_toxic domain NamedThing
ChemicalEntity has_chemical_role domain NamedThing
ChemicalEntity provided_by domain NamedThing
ChemicalEntity xref domain NamedThing
ChemicalEntity full_name domain NamedThing
ChemicalEntity synonym domain NamedThing
SmallMolecule available_from domain NamedThing
SmallMolecule max_tolerated_dose domain NamedThing
SmallMolecule is_toxic domain NamedThing
SmallMolecule has_chemical_role domain NamedThing
SmallMolecule provided_by domain NamedThing
SmallMolecule xref domain NamedThing
SmallMolecule full_name domain NamedThing
SmallMolecule synonym domain NamedThing
ChemicalMixture available_from domain NamedThing
ChemicalMixture max_tolerated_dose domain NamedThing
ChemicalMixture is_toxic domain NamedThing
ChemicalMixture has_chemical_role domain NamedThing
ChemicalMixture provided_by domain NamedThing
ChemicalMixture xref domain NamedThing
ChemicalMixture full_name domain NamedThing
ChemicalMixture synonym domain NamedThing
NucleicAcidEntity has_biological_sequence domain NamedThing
NucleicAcidEntity available_from domain NamedThing
NucleicAcidEntity max_tolerated_dose domain NamedThing
NucleicAcidEntity is_toxic domain NamedThing
NucleicAcidEntity has_chemical_role domain NamedThing
NucleicAcidEntity provided_by domain NamedThing
NucleicAcidEntity xref domain NamedThing
NucleicAcidEntity full_name domain NamedThing
NucleicAcidEntity synonym domain NamedThing
RegulatoryRegion has_biological_sequence domain NamedThing
RegulatoryRegion provided_by domain NamedThing
RegulatoryRegion xref domain NamedThing
RegulatoryRegion full_name domain NamedThing
RegulatoryRegion synonym domain NamedThing
AccessibleDnaRegion has_biological_sequence domain NamedThing
AccessibleDnaRegion provided_by domain NamedThing
AccessibleDnaRegion xref domain NamedThing
AccessibleDnaRegion full_name domain NamedThing
AccessibleDnaRegion synonym domain NamedThing
TranscriptionFactorBindingSite has_biological_sequence domain NamedThing
TranscriptionFactorBindingSite provided_by domain NamedThing
TranscriptionFactorBindingSite xref domain NamedThing
TranscriptionFactorBindingSite full_name domain NamedThing
TranscriptionFactorBindingSite synonym domain NamedThing
MolecularMixture available_from domain NamedThing
MolecularMixture max_tolerated_dose domain NamedThing
MolecularMixture is_toxic domain NamedThing
MolecularMixture has_chemical_role domain NamedThing
MolecularMixture provided_by domain NamedThing
MolecularMixture xref domain NamedThing
MolecularMixture full_name domain NamedThing
MolecularMixture synonym domain NamedThing
ComplexMolecularMixture available_from domain NamedThing
ComplexMolecularMixture max_tolerated_dose domain NamedThing
ComplexMolecularMixture is_toxic domain NamedThing
ComplexMolecularMixture has_chemical_role domain NamedThing
ComplexMolecularMixture provided_by domain NamedThing
ComplexMolecularMixture xref domain NamedThing
ComplexMolecularMixture full_name domain NamedThing
ComplexMolecularMixture synonym domain NamedThing
BiologicalProcessOrActivity has_input range NamedThing
BiologicalProcessOrActivity has_output range NamedThing
BiologicalProcessOrActivity provided_by domain NamedThing
BiologicalProcessOrActivity xref domain NamedThing
BiologicalProcessOrActivity full_name domain NamedThing
BiologicalProcessOrActivity synonym domain NamedThing
MolecularActivity provided_by domain NamedThing
MolecularActivity xref domain NamedThing
MolecularActivity full_name domain NamedThing
MolecularActivity synonym domain NamedThing
BiologicalProcess has_input range NamedThing
BiologicalProcess has_output range NamedThing
BiologicalProcess provided_by domain NamedThing
BiologicalProcess xref domain NamedThing
BiologicalProcess full_name domain NamedThing
BiologicalProcess synonym domain NamedThing
Pathway has_input range NamedThing
Pathway has_output range NamedThing
Pathway provided_by domain NamedThing
Pathway xref domain NamedThing
Pathway full_name domain NamedThing
Pathway synonym domain NamedThing
PhysiologicalProcess has_input range NamedThing
PhysiologicalProcess has_output range NamedThing
PhysiologicalProcess provided_by domain NamedThing
PhysiologicalProcess xref domain NamedThing
PhysiologicalProcess full_name domain NamedThing
PhysiologicalProcess synonym domain NamedThing
Behavior has_input range NamedThing
Behavior has_output range NamedThing
Behavior provided_by domain NamedThing
Behavior xref domain NamedThing
Behavior full_name domain NamedThing
Behavior synonym domain NamedThing
ProcessedMaterial available_from domain NamedThing
ProcessedMaterial max_tolerated_dose domain NamedThing
ProcessedMaterial is_toxic domain NamedThing
ProcessedMaterial has_chemical_role domain NamedThing
ProcessedMaterial provided_by domain NamedThing
ProcessedMaterial xref domain NamedThing
ProcessedMaterial full_name domain NamedThing
ProcessedMaterial synonym domain NamedThing
Drug available_from domain NamedThing
Drug max_tolerated_dose domain NamedThing
Drug is_toxic domain NamedThing
Drug has_chemical_role domain NamedThing
Drug provided_by domain NamedThing
Drug xref domain NamedThing
Drug full_name domain NamedThing
Drug synonym domain NamedThing
EnvironmentalFoodContaminant available_from domain NamedThing
EnvironmentalFoodContaminant max_tolerated_dose domain NamedThing
EnvironmentalFoodContaminant is_toxic domain NamedThing
EnvironmentalFoodContaminant has_chemical_role domain NamedThing
EnvironmentalFoodContaminant provided_by domain NamedThing
EnvironmentalFoodContaminant xref domain NamedThing
EnvironmentalFoodContaminant full_name domain NamedThing
EnvironmentalFoodContaminant synonym domain NamedThing
FoodAdditive available_from domain NamedThing
FoodAdditive max_tolerated_dose domain NamedThing
FoodAdditive is_toxic domain NamedThing
FoodAdditive has_chemical_role domain NamedThing
FoodAdditive provided_by domain NamedThing
FoodAdditive xref domain NamedThing
FoodAdditive full_name domain NamedThing
FoodAdditive synonym domain NamedThing
Food available_from domain NamedThing
Food max_tolerated_dose domain NamedThing
Food is_toxic domain NamedThing
Food has_chemical_role domain NamedThing
Food provided_by domain NamedThing
Food xref domain NamedThing
Food full_name domain NamedThing
Food synonym domain NamedThing
OrganismAttribute has_qualitative_value range NamedThing
OrganismAttribute provided_by domain NamedThing
OrganismAttribute xref domain NamedThing
OrganismAttribute full_name domain NamedThing
OrganismAttribute synonym domain NamedThing
PhenotypicQuality has_qualitative_value range NamedThing
PhenotypicQuality provided_by domain NamedThing
PhenotypicQuality xref domain NamedThing
PhenotypicQuality full_name domain NamedThing
PhenotypicQuality synonym domain NamedThing
GeneticInheritance provided_by domain NamedThing
GeneticInheritance xref domain NamedThing
GeneticInheritance full_name domain NamedThing
GeneticInheritance synonym domain NamedThing
OrganismalEntity provided_by domain NamedThing
OrganismalEntity xref domain NamedThing
OrganismalEntity full_name domain NamedThing
OrganismalEntity synonym domain NamedThing
Bacterium provided_by domain NamedThing
Bacterium xref domain NamedThing
Bacterium full_name domain NamedThing
Bacterium synonym domain NamedThing
Virus provided_by domain NamedThing
Virus xref domain NamedThing
Virus full_name domain NamedThing
Virus synonym domain NamedThing
CellularOrganism provided_by domain NamedThing
CellularOrganism xref domain NamedThing
CellularOrganism full_name domain NamedThing
CellularOrganism synonym domain NamedThing
Mammal provided_by domain NamedThing
Mammal xref domain NamedThing
Mammal full_name domain NamedThing
Mammal synonym domain NamedThing
Human provided_by domain NamedThing
Human xref domain NamedThing
Human full_name domain NamedThing
Human synonym domain NamedThing
Plant provided_by domain NamedThing
Plant xref domain NamedThing
Plant full_name domain NamedThing
Plant synonym domain NamedThing
Invertebrate provided_by domain NamedThing
Invertebrate xref domain NamedThing
Invertebrate full_name domain NamedThing
Invertebrate synonym domain NamedThing
Vertebrate provided_by domain NamedThing
Vertebrate xref domain NamedThing
Vertebrate full_name domain NamedThing
Vertebrate synonym domain NamedThing
Fungus provided_by domain NamedThing
Fungus xref domain NamedThing
Fungus full_name domain NamedThing
Fungus synonym domain NamedThing
LifeStage provided_by domain NamedThing
LifeStage xref domain NamedThing
LifeStage full_name domain NamedThing
LifeStage synonym domain NamedThing
IndividualOrganism provided_by domain NamedThing
IndividualOrganism xref domain NamedThing
IndividualOrganism full_name domain NamedThing
IndividualOrganism synonym domain NamedThing
PopulationOfIndividualOrganisms provided_by domain NamedThing
PopulationOfIndividualOrganisms xref domain NamedThing
PopulationOfIndividualOrganisms full_name domain NamedThing
PopulationOfIndividualOrganisms synonym domain NamedThing
DiseaseOrPhenotypicFeature provided_by domain NamedThing
DiseaseOrPhenotypicFeature xref domain NamedThing
DiseaseOrPhenotypicFeature full_name domain NamedThing
DiseaseOrPhenotypicFeature synonym domain NamedThing
Disease provided_by domain NamedThing
Disease xref domain NamedThing
Disease full_name domain NamedThing
Disease synonym domain NamedThing
PhenotypicFeature provided_by domain NamedThing
PhenotypicFeature xref domain NamedThing
PhenotypicFeature full_name domain NamedThing
PhenotypicFeature synonym domain NamedThing
BehavioralFeature provided_by domain NamedThing
BehavioralFeature xref domain NamedThing
BehavioralFeature full_name domain NamedThing
BehavioralFeature synonym domain NamedThing
AnatomicalEntity provided_by domain NamedThing
AnatomicalEntity xref domain NamedThing
AnatomicalEntity full_name domain NamedThing
AnatomicalEntity synonym domain NamedThing
CellularComponent provided_by domain NamedThing
CellularComponent xref domain NamedThing
CellularComponent full_name domain NamedThing
CellularComponent synonym domain NamedThing
Cell provided_by domain NamedThing
Cell xref domain NamedThing
Cell full_name domain NamedThing
Cell synonym domain NamedThing
CellLine provided_by domain NamedThing
CellLine xref domain NamedThing
CellLine full_name domain NamedThing
CellLine synonym domain NamedThing
GrossAnatomicalStructure provided_by domain NamedThing
GrossAnatomicalStructure xref domain NamedThing
GrossAnatomicalStructure full_name domain NamedThing
GrossAnatomicalStructure synonym domain NamedThing
Gene symbol domain NamedThing
Gene xref domain NamedThing
Gene has_biological_sequence domain NamedThing
Gene provided_by domain NamedThing
Gene full_name domain NamedThing
Gene synonym domain NamedThing
GeneProductMixin synonym domain NamedThing
GeneProductMixin xref domain NamedThing
GeneProductIsoformMixin synonym domain NamedThing
GeneProductIsoformMixin xref domain NamedThing
MacromolecularComplex provided_by domain NamedThing
MacromolecularComplex xref domain NamedThing
MacromolecularComplex full_name domain NamedThing
MacromolecularComplex synonym domain NamedThing
NucleosomeModification has_biological_sequence domain NamedThing
NucleosomeModification provided_by domain NamedThing
NucleosomeModification xref domain NamedThing
NucleosomeModification full_name domain NamedThing
NucleosomeModification synonym domain NamedThing
Genome has_biological_sequence domain NamedThing
Genome provided_by domain NamedThing
Genome xref domain NamedThing
Genome full_name domain NamedThing
Genome synonym domain NamedThing
Exon provided_by domain NamedThing
Exon xref domain NamedThing
Exon full_name domain NamedThing
Exon synonym domain NamedThing
Transcript provided_by domain NamedThing
Transcript xref domain NamedThing
Transcript full_name domain NamedThing
Transcript synonym domain NamedThing
CodingSequence has_biological_sequence domain NamedThing
CodingSequence provided_by domain NamedThing
CodingSequence xref domain NamedThing
CodingSequence full_name domain NamedThing
CodingSequence synonym domain NamedThing
Polypeptide provided_by domain NamedThing
Polypeptide xref domain NamedThing
Polypeptide full_name domain NamedThing
Polypeptide synonym domain NamedThing
Protein synonym domain NamedThing
Protein xref domain NamedThing
Protein provided_by domain NamedThing
Protein full_name domain NamedThing
ProteinIsoform synonym domain NamedThing
ProteinIsoform xref domain NamedThing
ProteinIsoform provided_by domain NamedThing
ProteinIsoform full_name domain NamedThing
ProteinDomain has_gene_or_gene_product domain NamedThing
ProteinDomain provided_by domain NamedThing
ProteinDomain xref domain NamedThing
ProteinDomain full_name domain NamedThing
ProteinDomain synonym domain NamedThing
PosttranslationalModification provided_by domain NamedThing
PosttranslationalModification xref domain NamedThing
PosttranslationalModification full_name domain NamedThing
PosttranslationalModification synonym domain NamedThing
ProteinFamily has_gene_or_gene_product domain NamedThing
ProteinFamily provided_by domain NamedThing
ProteinFamily xref domain NamedThing
ProteinFamily full_name domain NamedThing
ProteinFamily synonym domain NamedThing
NucleicAcidSequenceMotif provided_by domain NamedThing
NucleicAcidSequenceMotif xref domain NamedThing
NucleicAcidSequenceMotif full_name domain NamedThing
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RNAProduct synonym domain NamedThing
RNAProduct xref domain NamedThing
RNAProduct provided_by domain NamedThing
RNAProduct full_name domain NamedThing
RNAProductIsoform synonym domain NamedThing
RNAProductIsoform xref domain NamedThing
RNAProductIsoform provided_by domain NamedThing
RNAProductIsoform full_name domain NamedThing
NoncodingRNAProduct synonym domain NamedThing
NoncodingRNAProduct xref domain NamedThing
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NoncodingRNAProduct full_name domain NamedThing
MicroRNA synonym domain NamedThing
MicroRNA xref domain NamedThing
MicroRNA provided_by domain NamedThing
MicroRNA full_name domain NamedThing
SiRNA synonym domain NamedThing
SiRNA xref domain NamedThing
SiRNA provided_by domain NamedThing
SiRNA full_name domain NamedThing
GeneGroupingMixin has_gene_or_gene_product domain NamedThing
GeneFamily has_gene_or_gene_product domain NamedThing
GeneFamily provided_by domain NamedThing
GeneFamily xref domain NamedThing
GeneFamily full_name domain NamedThing
GeneFamily synonym domain NamedThing
Zygosity has_qualitative_value range NamedThing
Zygosity provided_by domain NamedThing
Zygosity xref domain NamedThing
Zygosity full_name domain NamedThing
Zygosity synonym domain NamedThing
Genotype has_biological_sequence domain NamedThing
Genotype provided_by domain NamedThing
Genotype xref domain NamedThing
Genotype full_name domain NamedThing
Genotype synonym domain NamedThing
Haplotype has_biological_sequence domain NamedThing
Haplotype provided_by domain NamedThing
Haplotype xref domain NamedThing
Haplotype full_name domain NamedThing
Haplotype synonym domain NamedThing
SequenceVariant has_gene domain NamedThing
SequenceVariant has_biological_sequence domain NamedThing
SequenceVariant provided_by domain NamedThing
SequenceVariant xref domain NamedThing
SequenceVariant full_name domain NamedThing
SequenceVariant synonym domain NamedThing
Snv has_gene domain NamedThing
Snv has_biological_sequence domain NamedThing
Snv provided_by domain NamedThing
Snv xref domain NamedThing
Snv full_name domain NamedThing
Snv synonym domain NamedThing
ReagentTargetedGene has_biological_sequence domain NamedThing
ReagentTargetedGene provided_by domain NamedThing
ReagentTargetedGene xref domain NamedThing
ReagentTargetedGene full_name domain NamedThing
ReagentTargetedGene synonym domain NamedThing
ClinicalAttribute has_qualitative_value range NamedThing
ClinicalAttribute provided_by domain NamedThing
ClinicalAttribute xref domain NamedThing
ClinicalAttribute full_name domain NamedThing
ClinicalAttribute synonym domain NamedThing
ClinicalMeasurement has_qualitative_value range NamedThing
ClinicalMeasurement provided_by domain NamedThing
ClinicalMeasurement xref domain NamedThing
ClinicalMeasurement full_name domain NamedThing
ClinicalMeasurement synonym domain NamedThing
ClinicalModifier has_qualitative_value range NamedThing
ClinicalModifier provided_by domain NamedThing
ClinicalModifier xref domain NamedThing
ClinicalModifier full_name domain NamedThing
ClinicalModifier synonym domain NamedThing
ClinicalCourse has_qualitative_value range NamedThing
ClinicalCourse provided_by domain NamedThing
ClinicalCourse xref domain NamedThing
ClinicalCourse full_name domain NamedThing
ClinicalCourse synonym domain NamedThing
Onset has_qualitative_value range NamedThing
Onset provided_by domain NamedThing
Onset xref domain NamedThing
Onset full_name domain NamedThing
Onset synonym domain NamedThing
ClinicalEntity provided_by domain NamedThing
ClinicalEntity xref domain NamedThing
ClinicalEntity full_name domain NamedThing
ClinicalEntity synonym domain NamedThing
ClinicalTrial provided_by domain NamedThing
ClinicalTrial xref domain NamedThing
ClinicalTrial full_name domain NamedThing
ClinicalTrial synonym domain NamedThing
ClinicalIntervention provided_by domain NamedThing
ClinicalIntervention xref domain NamedThing
ClinicalIntervention full_name domain NamedThing
ClinicalIntervention synonym domain NamedThing
ClinicalFinding provided_by domain NamedThing
ClinicalFinding xref domain NamedThing
ClinicalFinding full_name domain NamedThing
ClinicalFinding synonym domain NamedThing
Hospitalization provided_by domain NamedThing
Hospitalization xref domain NamedThing
Hospitalization full_name domain NamedThing
Hospitalization synonym domain NamedThing
SocioeconomicAttribute has_qualitative_value range NamedThing
SocioeconomicAttribute provided_by domain NamedThing
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SocioeconomicAttribute full_name domain NamedThing
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Case provided_by domain NamedThing
Case xref domain NamedThing
Case full_name domain NamedThing
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Cohort provided_by domain NamedThing
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GenomicBackgroundExposure has_gene_or_gene_product domain NamedThing
GenomicBackgroundExposure has_biological_sequence domain NamedThing
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GenomicBackgroundExposure provided_by domain NamedThing
GenomicBackgroundExposure xref domain NamedThing
GenomicBackgroundExposure full_name domain NamedThing
GenomicBackgroundExposure synonym domain NamedThing
PathologicalProcess has_input range NamedThing
PathologicalProcess has_output range NamedThing
PathologicalProcess provided_by domain NamedThing
PathologicalProcess xref domain NamedThing
PathologicalProcess full_name domain NamedThing
PathologicalProcess synonym domain NamedThing
PathologicalProcessExposure has_qualitative_value range NamedThing
PathologicalProcessExposure provided_by domain NamedThing
PathologicalProcessExposure xref domain NamedThing
PathologicalProcessExposure full_name domain NamedThing
PathologicalProcessExposure synonym domain NamedThing
PathologicalAnatomicalStructure provided_by domain NamedThing
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PathologicalAnatomicalStructure full_name domain NamedThing
PathologicalAnatomicalStructure synonym domain NamedThing
PathologicalAnatomicalExposure has_qualitative_value range NamedThing
PathologicalAnatomicalExposure provided_by domain NamedThing
PathologicalAnatomicalExposure xref domain NamedThing
PathologicalAnatomicalExposure full_name domain NamedThing
PathologicalAnatomicalExposure synonym domain NamedThing
DiseaseOrPhenotypicFeatureExposure has_qualitative_value range NamedThing
DiseaseOrPhenotypicFeatureExposure provided_by domain NamedThing
DiseaseOrPhenotypicFeatureExposure xref domain NamedThing
DiseaseOrPhenotypicFeatureExposure full_name domain NamedThing
DiseaseOrPhenotypicFeatureExposure synonym domain NamedThing
ChemicalExposure has_qualitative_value range NamedThing
ChemicalExposure provided_by domain NamedThing
ChemicalExposure xref domain NamedThing
ChemicalExposure full_name domain NamedThing
ChemicalExposure synonym domain NamedThing
ComplexChemicalExposure has_qualitative_value range NamedThing
ComplexChemicalExposure provided_by domain NamedThing
ComplexChemicalExposure xref domain NamedThing
ComplexChemicalExposure full_name domain NamedThing
ComplexChemicalExposure synonym domain NamedThing
DrugExposure has_qualitative_value range NamedThing
DrugExposure provided_by domain NamedThing
DrugExposure xref domain NamedThing
DrugExposure full_name domain NamedThing
DrugExposure synonym domain NamedThing
DrugToGeneInteractionExposure has_gene_or_gene_product domain NamedThing
DrugToGeneInteractionExposure has_qualitative_value range NamedThing
DrugToGeneInteractionExposure provided_by domain NamedThing
DrugToGeneInteractionExposure xref domain NamedThing
DrugToGeneInteractionExposure full_name domain NamedThing
DrugToGeneInteractionExposure synonym domain NamedThing
Treatment has_drug domain NamedThing
Treatment has_device domain NamedThing
Treatment has_procedure domain NamedThing
Treatment provided_by domain NamedThing
Treatment xref domain NamedThing
Treatment full_name domain NamedThing
Treatment synonym domain NamedThing
BioticExposure has_qualitative_value range NamedThing
BioticExposure provided_by domain NamedThing
BioticExposure xref domain NamedThing
BioticExposure full_name domain NamedThing
BioticExposure synonym domain NamedThing
GeographicExposure has_qualitative_value range NamedThing
GeographicExposure provided_by domain NamedThing
GeographicExposure xref domain NamedThing
GeographicExposure full_name domain NamedThing
GeographicExposure synonym domain NamedThing
EnvironmentalExposure has_qualitative_value range NamedThing
EnvironmentalExposure provided_by domain NamedThing
EnvironmentalExposure xref domain NamedThing
EnvironmentalExposure full_name domain NamedThing
EnvironmentalExposure synonym domain NamedThing
BehavioralExposure has_qualitative_value range NamedThing
BehavioralExposure provided_by domain NamedThing
BehavioralExposure xref domain NamedThing
BehavioralExposure full_name domain NamedThing
BehavioralExposure synonym domain NamedThing
SocioeconomicExposure has_qualitative_value range NamedThing
SocioeconomicExposure provided_by domain NamedThing
SocioeconomicExposure xref domain NamedThing
SocioeconomicExposure full_name domain NamedThing
SocioeconomicExposure synonym domain NamedThing
Association subject range NamedThing
Association object range NamedThing
ChemicalEntityAssessesNamedThingAssociation object range NamedThing
CellLineToEntityAssociationMixin object range NamedThing
ChemicalEntityToEntityAssociationMixin object range NamedThing
DrugToEntityAssociationMixin object range NamedThing
ChemicalToEntityAssociationMixin object range NamedThing
CaseToEntityAssociationMixin object range NamedThing
NamedThingAssociatedWithLikelihoodOfNamedThingAssociation subject range NamedThing
NamedThingAssociatedWithLikelihoodOfNamedThingAssociation object range NamedThing
MaterialSampleToEntityAssociationMixin object range NamedThing
MaterialSampleDerivationAssociation object range NamedThing
DiseaseToEntityAssociationMixin object range NamedThing
EntityToExposureEventAssociationMixin subject range NamedThing
EntityToOutcomeAssociationMixin subject range NamedThing
ExposureEventToOutcomeAssociation subject range NamedThing
FrequencyQualifierMixin subject range NamedThing
FrequencyQualifierMixin object range NamedThing
EntityToFeatureOrDiseaseQualifiersMixin subject range NamedThing
EntityToFeatureOrDiseaseQualifiersMixin object range NamedThing
FeatureOrDiseaseQualifiersToEntityMixin subject range NamedThing
FeatureOrDiseaseQualifiersToEntityMixin object range NamedThing
EntityToPhenotypicFeatureAssociationMixin subject range NamedThing
EntityToPhenotypicFeatureAssociationMixin has_count domain NamedThing
EntityToPhenotypicFeatureAssociationMixin has_total domain NamedThing
EntityToPhenotypicFeatureAssociationMixin has_quotient domain NamedThing
EntityToPhenotypicFeatureAssociationMixin has_percentage domain NamedThing
PhenotypicFeatureToEntityAssociationMixin has_count domain NamedThing
PhenotypicFeatureToEntityAssociationMixin has_total domain NamedThing
PhenotypicFeatureToEntityAssociationMixin has_quotient domain NamedThing
PhenotypicFeatureToEntityAssociationMixin has_percentage domain NamedThing
PhenotypicFeatureToEntityAssociationMixin object range NamedThing
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PhenotypicFeatureToPhenotypicFeatureAssociation has_total domain NamedThing
PhenotypicFeatureToPhenotypicFeatureAssociation has_quotient domain NamedThing
PhenotypicFeatureToPhenotypicFeatureAssociation has_percentage domain NamedThing
InformationContentEntityToNamedThingAssociation subject range NamedThing
InformationContentEntityToNamedThingAssociation object range NamedThing
EntityToDiseaseAssociationMixin subject range NamedThing
DiseaseOrPhenotypicFeatureToEntityAssociationMixin object range NamedThing
EntityToDiseaseOrPhenotypicFeatureAssociationMixin subject range NamedThing
GenotypeToEntityAssociationMixin object range NamedThing
GenotypeToPhenotypicFeatureAssociation has_count domain NamedThing
GenotypeToPhenotypicFeatureAssociation has_total domain NamedThing
GenotypeToPhenotypicFeatureAssociation has_quotient domain NamedThing
GenotypeToPhenotypicFeatureAssociation has_percentage domain NamedThing
ExposureEventToPhenotypicFeatureAssociation has_count domain NamedThing
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ExposureEventToPhenotypicFeatureAssociation has_percentage domain NamedThing
DiseaseToPhenotypicFeatureAssociation has_count domain NamedThing
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DiseaseToPhenotypicFeatureAssociation has_quotient domain NamedThing
DiseaseToPhenotypicFeatureAssociation has_percentage domain NamedThing
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CaseToPhenotypicFeatureAssociation has_total domain NamedThing
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CaseToPhenotypicFeatureAssociation has_percentage domain NamedThing
BehaviorToBehavioralFeatureAssociation has_count domain NamedThing
BehaviorToBehavioralFeatureAssociation has_total domain NamedThing
BehaviorToBehavioralFeatureAssociation has_quotient domain NamedThing
BehaviorToBehavioralFeatureAssociation has_percentage domain NamedThing
GeneToEntityAssociationMixin object range NamedThing
VariantToEntityAssociationMixin object range NamedThing
GeneToDiseaseOrPhenotypicFeatureAssociation has_count domain NamedThing
GeneToDiseaseOrPhenotypicFeatureAssociation has_total domain NamedThing
GeneToDiseaseOrPhenotypicFeatureAssociation has_quotient domain NamedThing
GeneToDiseaseOrPhenotypicFeatureAssociation has_percentage domain NamedThing
GeneToPhenotypicFeatureAssociation has_count domain NamedThing
GeneToPhenotypicFeatureAssociation has_total domain NamedThing
GeneToPhenotypicFeatureAssociation has_quotient domain NamedThing
GeneToPhenotypicFeatureAssociation has_percentage domain NamedThing
GeneToDiseaseAssociation has_count domain NamedThing
GeneToDiseaseAssociation has_total domain NamedThing
GeneToDiseaseAssociation has_quotient domain NamedThing
GeneToDiseaseAssociation has_percentage domain NamedThing
CausalGeneToDiseaseAssociation has_count domain NamedThing
CausalGeneToDiseaseAssociation has_total domain NamedThing
CausalGeneToDiseaseAssociation has_quotient domain NamedThing
CausalGeneToDiseaseAssociation has_percentage domain NamedThing
CorrelatedGeneToDiseaseAssociation has_count domain NamedThing
CorrelatedGeneToDiseaseAssociation has_total domain NamedThing
CorrelatedGeneToDiseaseAssociation has_quotient domain NamedThing
CorrelatedGeneToDiseaseAssociation has_percentage domain NamedThing
DruggableGeneToDiseaseAssociation has_count domain NamedThing
DruggableGeneToDiseaseAssociation has_total domain NamedThing
DruggableGeneToDiseaseAssociation has_quotient domain NamedThing
DruggableGeneToDiseaseAssociation has_percentage domain NamedThing
PhenotypicFeatureToDiseaseAssociation has_count domain NamedThing
PhenotypicFeatureToDiseaseAssociation has_total domain NamedThing
PhenotypicFeatureToDiseaseAssociation has_quotient domain NamedThing
PhenotypicFeatureToDiseaseAssociation has_percentage domain NamedThing
VariantToPopulationAssociation has_count domain NamedThing
VariantToPopulationAssociation has_total domain NamedThing
VariantToPopulationAssociation has_quotient domain NamedThing
VariantToPopulationAssociation has_percentage domain NamedThing
VariantToPhenotypicFeatureAssociation has_count domain NamedThing
VariantToPhenotypicFeatureAssociation has_total domain NamedThing
VariantToPhenotypicFeatureAssociation has_quotient domain NamedThing
VariantToPhenotypicFeatureAssociation has_percentage domain NamedThing
ModelToDiseaseAssociationMixin subject range NamedThing
ModelToDiseaseAssociationMixin object range NamedThing
GeneAsAModelOfDiseaseAssociation has_count domain NamedThing
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GeneAsAModelOfDiseaseAssociation has_quotient domain NamedThing
GeneAsAModelOfDiseaseAssociation has_percentage domain NamedThing
GeneHasVariantThatContributesToDiseaseAssociation has_count domain NamedThing
GeneHasVariantThatContributesToDiseaseAssociation has_total domain NamedThing
GeneHasVariantThatContributesToDiseaseAssociation has_quotient domain NamedThing
GeneHasVariantThatContributesToDiseaseAssociation has_percentage domain NamedThing
MacromolecularMachineToEntityAssociationMixin subject range NamedThing
MacromolecularMachineToEntityAssociationMixin object range NamedThing
EntityToDiseaseAssociation subject range NamedThing
EntityToDiseaseAssociation object range NamedThing
EntityToPhenotypicFeatureAssociation subject range NamedThing
EntityToPhenotypicFeatureAssociation object range NamedThing
SequenceAssociation subject range NamedThing
SequenceAssociation object range NamedThing
OrganismTaxonToEntityAssociation object range NamedThing
OrganismTaxonToEnvironmentAssociation object range NamedThing

LinkML Source

name: named thing
description: a databased entity or concept/class
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- BFO:0000001
- WIKIDATA:Q35120
- UMLSSG:OBJC
- STY:T071
- dcid:Thing
is_a: entity
slots:
- provided by
- xref
- full name
- synonym
slot_usage:
  category:
    name: category
    required: true