Class: ExposureEvent
Description: A (possibly time bounded) incidence of a feature of the environment of an organism that influences one or more phenotypic features of that organism, potentially mediated by genes
Aliases: exposure, experimental condition
classDiagram
class ExposureEvent
OntologyClass <|-- ExposureEvent
NamedThing <|-- ExposureEvent
ExposureEvent <|-- GenomicBackgroundExposure
ExposureEvent <|-- PathologicalProcessExposure
ExposureEvent <|-- PathologicalAnatomicalExposure
ExposureEvent <|-- DiseaseOrPhenotypicFeatureExposure
ExposureEvent <|-- ChemicalExposure
ExposureEvent <|-- ComplexChemicalExposure
ExposureEvent <|-- Treatment
ExposureEvent <|-- BioticExposure
ExposureEvent <|-- EnvironmentalExposure
ExposureEvent <|-- BehavioralExposure
ExposureEvent <|-- SocioeconomicExposure
ExposureEvent : category
ExposureEvent : deprecated
ExposureEvent : description
ExposureEvent : equivalent_identifiers
ExposureEvent : exposure_additional_condition
ExposureEvent : exposure_duration
ExposureEvent : exposure_end_age
ExposureEvent : exposure_magnitude
ExposureEvent : exposure_route
ExposureEvent : exposure_start_age
ExposureEvent : exposure_type
ExposureEvent : exposure_vehicle
ExposureEvent : full_name
ExposureEvent : has_attribute
ExposureEvent --|> Attribute : has_attribute
ExposureEvent : id
ExposureEvent : information_content
ExposureEvent : iri
ExposureEvent : name
ExposureEvent : provided_by
ExposureEvent : synonym
ExposureEvent : taxon
ExposureEvent : timepoint
ExposureEvent : type
ExposureEvent : xref
Inheritance
- Entity
- NamedThing
- ExposureEvent [ OntologyClass]
- GenomicBackgroundExposure [ GeneGroupingMixin PhysicalEssence GenomicEntity ThingWithTaxon OntologyClass]
- PathologicalProcessExposure
- PathologicalAnatomicalExposure
- DiseaseOrPhenotypicFeatureExposure [ PathologicalEntityMixin]
- ChemicalExposure
- ComplexChemicalExposure
- Treatment [ ChemicalOrDrugOrTreatment]
- BioticExposure
- EnvironmentalExposure
- BehavioralExposure
- SocioeconomicExposure
- ExposureEvent [ OntologyClass]
- NamedThing
Slots
| Name | Cardinality and Range | Inheritance | Examples |
|---|---|---|---|
| timepoint: a point in time |
0..1 TimeType |
direct | |
| exposure_type: Type of exposure |
0..1 String |
direct | |
| exposure_vehicle: Type of an exposure event. |
0..1 String |
direct | |
| exposure_route: Route of exposure. |
0..1 String |
direct | |
| exposure_start_age: Starting age of an exposure event. |
0..1 Integer |
direct | |
| exposure_end_age: Ending stage of an exposure event. |
0..1 Integer |
direct | |
| exposure_duration: Duration of an exposure event. |
0..1 Time |
direct | |
| exposure_magnitude: Magnitude of an exposure event, e.g, parts per million of a toxic chemical. |
0..1 String |
direct | |
| exposure_additional_condition: Additional conditions impacting an exposure event. |
0..1 String |
direct | |
| id: Could generally be a CURIE from a suitable exposure ontology like ECTO. |
1 String |
Entity, OntologyClass | |
| provided_by: The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph. |
* String |
NamedThing | |
| xref: A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references. |
* Uriorcurie |
NamedThing | |
| full_name: a long-form human readable name for a thing |
0..1 LabelType |
NamedThing | |
| synonym: Alternate human-readable names for a thing |
* LabelType |
NamedThing | |
| equivalent_identifiers: A set of identifiers that are considered equivalent to the primary identifier of the entity. This attribute is used to represent a collection of identifiers that are considered equivalent to the primary identifier of an entity. These equivalent identifiers may come from different databases, ontologies, or naming conventions, but they all refer to the same underlying concept or entity. This attribute is particularly useful in data integration and interoperability scenarios, where it is important to recognize and link different representations of the same entity across various sources. |
* Uriorcurie |
NamedThing | |
| information_content: Information content (IC) value for a term, primarily from Automats. |
0..1 Float |
NamedThing | |
| taxon: A property that indicates the taxonomic classification of an entity. Values for this slot should be from the NCBITaxon ontology. |
0..1 Uriorcurie |
NamedThing | |
| iri: An IRI for an entity. This is determined by the id using expansion rules. |
0..1 IriType |
Entity | |
| category: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing} |
1..* Uriorcurie |
Entity | |
| type: None |
* String |
Entity | |
| name: A human-readable name for an attribute or entity. |
0..1 LabelType |
Entity | |
| description: a human-readable description of an entity |
0..1 NarrativeText |
Entity | |
| has_attribute: connects any entity to an attribute |
* Attribute |
Entity | |
| deprecated: A boolean flag indicating that an entity is no longer considered current or valid. |
0..1 Boolean |
Entity |
Usages
LinkML Source
name: exposure event
description: A (possibly time bounded) incidence of a feature of the environment of
an organism that influences one or more phenotypic features of that organism, potentially
mediated by genes
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/vocab/
aliases:
- exposure
- experimental condition
exact_mappings:
- XCO:0000000
is_a: named thing
mixins:
- ontology class
slots:
- timepoint
- exposure type
- exposure vehicle
- exposure route
- exposure start age
- exposure end age
- exposure duration
- exposure magnitude
- exposure additional condition
slot_usage:
id:
name: id
description: Could generally be a CURIE from a suitable exposure ontology like
ECTO.