Skip to content

Class: IngestMetadata

Metadata about a specific data ingest process and its outputs

URI: biolink:IngestMetadata

classDiagram class IngestMetadata click IngestMetadata href "../IngestMetadata" IngestMetadata : created_by IngestMetadata : creation_date IngestMetadata : ingest_code_url IngestMetadata : ingest_guide_url IngestMetadata : node_normalizer IngestMetadata : node_normalizer_version IngestMetadata : source_access_urls IngestMetadata : source_data_files IngestMetadata : source_data_formats IngestMetadata : source_data_version IngestMetadata : source_download_date IngestMetadata : source_infores_id IngestMetadata : source_license IngestMetadata : source_publication_date IngestMetadata : target_creation_date IngestMetadata : target_data_format IngestMetadata : target_data_model IngestMetadata : target_data_model_version IngestMetadata : target_data_version IngestMetadata : target_license IngestMetadata : target_title IngestMetadata : target_type IngestMetadata : title

Slots

Name Cardinality and Range Description Inheritance
title 1
String		 Human-readable name for this metadata object direct
created_by *
String		 One or more creators of this ingest metadata file direct
creation_date 1
Date		 Date the ingest metadata was created direct
ingest_code_url 1
Uriorcurie		 URL of the code used for the ingest (tagged release or branch) direct
ingest_guide_url 0..1
Uriorcurie		 URL of the RIG (Reference Ingest Guide) direct
source_infores_id 1
Uriorcurie		 Infores identifier of the ingested source direct
source_license 0..1
String		 License or terms of use for the source direct
source_data_version 1
String		 Version of the ingested source data direct
source_publication_date 0..1
Date		 Date the source data was published direct
source_download_date 0..1
Date		 Date the source data was downloaded direct
source_access_urls *
Uriorcurie		 URLs from which the source data was accessed direct
source_data_formats *
String		 Formats of source data files or payloads direct
source_data_files *
String		 List of source file names ingested direct
target_title 1
String		 Human-readable name of the output dataset/graph direct
target_type 1
String		 Level of processing applied to the output (e direct
target_data_version 1
String		 Version of the output dataset/graph direct
target_creation_date 1
Date		 Date the output was created direct
target_license 1
String		 License or terms of use for the output direct
target_data_format 1
String		 Format of the output graph (KGX) direct
target_data_model 0..1
String		 Data model used (Biolink Model) direct
target_data_model_version 0..1
String		 Version of the data model used direct
node_normalizer 0..1
String		 Name of the node normalizer used direct
node_normalizer_version 0..1
String		 Version of the node normalizer used direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/ingest-metadata

Mappings

Mapping Type Mapped Value
self biolink:IngestMetadata
native biolink:IngestMetadata

LinkML Source

Direct

name: IngestMetadata
description: Metadata about a specific data ingest process and its outputs
from_schema: https://w3id.org/biolink/ingest-metadata
slots:
- title
- created_by
- creation_date
- ingest_code_url
- ingest_guide_url
- source_infores_id
- source_license
- source_data_version
- source_publication_date
- source_download_date
- source_access_urls
- source_data_formats
- source_data_files
- target_title
- target_type
- target_data_version
- target_creation_date
- target_license
- target_data_format
- target_data_model
- target_data_model_version
- node_normalizer
- node_normalizer_version

Induced

name: IngestMetadata
description: Metadata about a specific data ingest process and its outputs
from_schema: https://w3id.org/biolink/ingest-metadata
attributes:
  title:
    name: title
    description: Human-readable name for this metadata object
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    identifier: true
    alias: title
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: true
  created_by:
    name: created_by
    description: One or more creators of this ingest metadata file
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: created_by
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    multivalued: true
  creation_date:
    name: creation_date
    description: Date the ingest metadata was created
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: creation_date
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: date
    required: true
  ingest_code_url:
    name: ingest_code_url
    description: URL of the code used for the ingest (tagged release or branch)
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: ingest_code_url
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: uriorcurie
    required: true
  ingest_guide_url:
    name: ingest_guide_url
    description: URL of the RIG (Reference Ingest Guide)
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: ingest_guide_url
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: uriorcurie
    required: false
  source_infores_id:
    name: source_infores_id
    description: Infores identifier of the ingested source
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: source_infores_id
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: uriorcurie
    required: true
  source_license:
    name: source_license
    description: License or terms of use for the source
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: source_license
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: false
  source_data_version:
    name: source_data_version
    description: Version of the ingested source data
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: source_data_version
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: true
  source_publication_date:
    name: source_publication_date
    description: Date the source data was published
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: source_publication_date
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: date
    required: false
  source_download_date:
    name: source_download_date
    description: Date the source data was downloaded
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: source_download_date
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: date
    required: false
  source_access_urls:
    name: source_access_urls
    description: URLs from which the source data was accessed
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: source_access_urls
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: uriorcurie
    required: false
    multivalued: true
  source_data_formats:
    name: source_data_formats
    description: Formats of source data files or payloads
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: source_data_formats
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: false
    multivalued: true
  source_data_files:
    name: source_data_files
    description: List of source file names ingested
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: source_data_files
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: false
    multivalued: true
  target_title:
    name: target_title
    description: Human-readable name of the output dataset/graph
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: target_title
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: true
  target_type:
    name: target_type
    description: Level of processing applied to the output (e.g. Source-KG, Biolink
      KG, Normalized KG)
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: target_type
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: true
    pattern: ^(Source-KG|Biolink KG|Normalized KG)$
  target_data_version:
    name: target_data_version
    description: Version of the output dataset/graph
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: target_data_version
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: true
  target_creation_date:
    name: target_creation_date
    description: Date the output was created
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: target_creation_date
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: date
    required: true
  target_license:
    name: target_license
    description: License or terms of use for the output
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: target_license
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: true
  target_data_format:
    name: target_data_format
    description: Format of the output graph (KGX)
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: target_data_format
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: true
  target_data_model:
    name: target_data_model
    description: Data model used (Biolink Model)
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: target_data_model
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: false
  target_data_model_version:
    name: target_data_model_version
    description: Version of the data model used
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: target_data_model_version
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: false
  node_normalizer:
    name: node_normalizer
    description: Name of the node normalizer used
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: node_normalizer
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: false
  node_normalizer_version:
    name: node_normalizer_version
    description: Version of the node normalizer used
    from_schema: https://w3id.org/biolink/ingest-metadata
    rank: 1000
    alias: node_normalizer_version
    owner: IngestMetadata
    domain_of:
    - IngestMetadata
    range: string
    required: false