KGX Ingest Metadata Schema
A schema for describing metadata about a specific execution of a source ingest to produce a specific KGX-format graph.
URI: https://w3id.org/biolink/kgx/ingest-metadata-schema
Name: kgx_ingest_metadata_schema
Classes
| Class | Description |
|---|---|
| IngestMetadataFile | Information about a particular ingest performed to produce a KGX graph, descr... |
Slots
| Slot | Description |
|---|---|
| edge_predicates | List of all Biolink predicates used in the graph |
| file_created_by | The agent(s) (person if hand-authored, software tool if created programmatica... |
| file_creation_date | When this metadata file was created |
| file_name | An informative, human-readable name for this metadata file/object |
| ingest_code_url | URL of the specific official release or tagged branch of the ingest code exec... |
| ingest_code_version | The version of the ingest code executed to perform the ingest |
| node_categories | List of all Biolink categories used for nodes in the graph |
| node_normalizer | Name/identifier of the algorithm/tool used to perform node normalization on t... |
| node_normalizer_url | URL(s) pointing to source code and/or information about the node normalizatio... |
| node_normalizer_version | Version of the node normalization tool/algorithm |
| orphan_node_count | Count of nodes in the graph that do not participate in an edge |
| source_access_date | Date the source data was accessed/downloaded into the system that performed t... |
| source_access_urls | URLs where source data was accessed / downloaded / queried to be brought into... |
| source_data_version | Version of the source data ingested - using source's own conventions, or make... |
| source_file_names | File names from which content used to produce the output KGX graph was retrie... |
| source_infores_id | Infores identifier of the ingested source |
| target_creation_date | Date the target data set/graph was created |
| target_data_model_version | Version of the target data model used to structure the KGX graph data |
| target_data_url | URL where the dataset/graph can be retrieved |
| target_data_version | version of the target dataset/graph |
| target_format | Format in which the KGX graph is serialized (e |
| target_model | Name/identifier of the data model used to structure the KGX graph data |
| target_model_url | A URL providing information about the data model used to structure the KGX gr... |
| target_name | A unique human readable name of the target data set/graph produced by this in... |
| total_edge_count | Count of total edges in the graph |
| total_node_count | Count of total nodes in the graph |
Enumerations
| Enumeration | Description |
|---|---|
Types
| Type | Description |
|---|---|
| Boolean | A binary (true or false) value |
| Curie | a compact URI |
| Date | a date (year, month and day) in an idealized calendar |
| DateOrDatetime | Either a date or a datetime |
| Datetime | The combination of a date and time |
| Decimal | A real number with arbitrary precision that conforms to the xsd:decimal speci... |
| Double | A real number that conforms to the xsd:double specification |
| Float | A real number that conforms to the xsd:float specification |
| Integer | An integer |
| Jsonpath | A string encoding a JSON Path |
| Jsonpointer | A string encoding a JSON Pointer |
| Ncname | Prefix part of CURIE |
| Nodeidentifier | A URI, CURIE or BNODE that represents a node in a model |
| Objectidentifier | A URI or CURIE that represents an object in the model |
| Sparqlpath | A string encoding a SPARQL Property Path |
| String | A character string |
| Time | A time object represents a (local) time of day, independent of any particular... |
| Uri | a complete URI |
| Uriorcurie | a URI or a CURIE |
Subsets
| Subset | Description |
|---|---|