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Registry

Information Resource Registry Overview

ID Name Status Knowledge Level Description
infores:rnacentral RNAcentral released knowledge_assertion A comprehensive database of non-coding RNA sequenc...
infores:dictybase dictyBase released knowledge_assertion The central resource for Dictyostelid genomics, pr...
infores:cacao Community Assessment of Community Annotation with Ontologies released knowledge_assertion A collaborative annotation project where undergrad...
infores:go-central GO Central released knowledge_assertion The core GO Consortium annotation team responsible...
infores:goc Gene Ontology Consortium released knowledge_assertion The consortium that develops and maintains the Gen...
infores:disprot DisProt released knowledge_assertion A database of intrinsically disordered proteins th...
infores:agrkb Alliance of Genome Resources (AGR Knowledgebase) released knowledge_assertion N/A
infores:aact Aggregate Analysis of ClinicalTrial.gov (AACT) database released knowledge_assertion https://ctti-clinicaltrials.org/our-work/quality/s...
infores:answer-coalesce Answer coalesce deprecated knowledge_assertion Answer coalesce: This service accepts a TRAPI 1.1 ...
infores:aragorn ARAGORN released prediction ARAGORN: Performs a query operation which compiles...
infores:aragorn-ranker ARAGORN Ranker deprecated knowledge_assertion ARAGORN Ranker: The ranker used by the ARAGORN ARA...
infores:arax ARAX Translator Reasoner released prediction TRAPI 1.1 endpoint for the NCATS Biomedical Transl...
infores:atc-codes-umls Anatomical Therapeutic Chemical (ATC) Codes (from UMLS) released knowledge_assertion N/A
infores:atgo Autophagy Ontology released knowledge_assertion N/A
infores:athena Athena released knowledge_assertion N/A
infores:automat-genome-alliance Automat Alliance of Genome Resources released knowledge_assertion N/A
infores:automat-renci-sri-reference-kg Automat RENCI SRI Reference KG deprecated knowledge_assertion A graph based on the [Monarch API (https://api.mon...
infores:automat-chem-norm Automat Chemical normalization (trapi v-1.1.0) deprecated knowledge_assertion A graph linking together similar compounds. Two ...
infores:automat-chembio Automat Chembio deprecated knowledge_assertion A graph based on [chem2bio2rdf (http://cheminfov.i...
infores:automat-cord19 Automat Cord19 deprecated not_provided A literature co-occurence graph based on parsing t...
infores:automat-cord19-scibite Automat Cord19 Scibite (trapi v-1.1.0) deprecated not_provided A literature co-occurence graph based on the [scib...
infores:automat-cord19-scigraph Automat Cord19 Scigraph (trapi v-1.1.0) deprecated not_provided A literature co-occurence graph based on scigraph ...
infores:automat-covid-phenotypes Automat Covid Phenotypes (trapi v-1.1.0) deprecated knowledge_assertion A hand-knowledge_assertion graph of phenotypes of ...
infores:automat-covidkop Automat Covidkop KG (trapi v-1.1.0) deprecated knowledge_assertion Knowledge graph constructed from Robokop KG by inc...
infores:automat-cam-kp Automat CAM-KP released knowledge_assertion TRAPI interface to database of Causal Activity Mod...
infores:automat-ctd Automat CTD released knowledge_assertion A graph based on the [Comparative Toxicogenomics D...
infores:automat-drug-central Automat DrugCentral released knowledge_assertion A graph based on DrugCentral
infores:automat-foodb Automat Foodb released knowledge_assertion A graph of the food/chemical relationships in [foo...
infores:automat-gtex Automat GTEx released knowledge_assertion A graph containing eqtl and sqtl information from ...
infores:automat-gtopdb Automat GtoPdb released knowledge_assertion A graph based on the [IUPHAR Guide to Pharmacology...
infores:automat-gwas-catalog Automat GWAS Catalog released knowledge_assertion A graph based on the GWAS Catalog
infores:automat-hetio Automat Hetio deprecated knowledge_assertion A graph based on hetionet (het.io).
infores:automat-hetionet Automat Hetionet released knowledge_assertion A graph based on hetionet (het.io).
infores:automat-hgnc Automat HGNC released knowledge_assertion Gene families from [HGNC (genenames.org)](genename...
infores:automat-hmdb Automat HMDB released knowledge_assertion A graph based on the [Human Metabolome DataBase (h...
infores:automat-human-goa Automat Human GOA released knowledge_assertion Human Gene Ontology Annotations from the GO consor...
infores:automat-icees-kg Automat ICEES KG released statistical_association N/A
infores:automat-intact Automat IntAct released knowledge_assertion Molecular (Gene-Gene) interactions from EBI IntAct...
infores:automat-kegg Automat KEGG deprecated knowledge_assertion A graph based on the [Kyoto Encyclopedia of Genes ...
infores:automat-monarchinitiative Automat Monarch Initiative released knowledge_assertion The Monarch Knowledge Graph is a reference impleme...
infores:automat-mychem-info Automat MyChem (trapi v-1.1.0) deprecated knowledge_assertion A graph integrating DrugBank, DrugCentral, and Aeo...
infores:automat-ontology-hierarchy Automat Ontological Hierarchy (trapi v-1.1.0) deprecated knowledge_assertion A graph for ontological hierarchy extracted from U...
infores:automat-openhealthdata-carolina Automat Openhealth Data at Carolina released statistical_association A graph based on infores:openhealthdata-carolina, ...
infores:automat-panther Automat PANTHER released knowledge_assertion A graph of gene families and pathways from [Panthe...
infores:automat-pharos Automat Pharos released knowledge_assertion A graph based on [Pharos (pharos.nih.gov)](pharos....
infores:automat-robokop-kg Automat ROBOKOP KG released knowledge_assertion Biomedical Knowledge graph build by constructing r...
infores:automat-text-mining-provider Automat Textmining KP deprecated knowledge_assertion A literature co-occurrence graph created by the Tr...
infores:automat-string-db Automat STRING released knowledge_assertion The Search Tool for the Retrieval of INteracting G...
infores:automat-sri-reference-kg Automat SRI Reference Knowledge Graph deprecated knowledge_assertion The SRI reference KG aims to aggregate knowledge s...
infores:automat-ubergraph Automat Ubergraph released knowledge_assertion A graph representation of Ubergraph, an integratio...
infores:automat-ubergraph-nonredundant Automat Ubergraph Nonredundant deprecated knowledge_assertion A graph representation of Ubergraph, an integratio...
infores:automat-viral-proteome Automat Viral Proteome released knowledge_assertion A graph consisting of viral proteins from UniProt,...
infores:automat-ehr-may-treat-kp Automat Multiomics EHRMLA May Treat API released knowledge_assertion A graph consisting of May Treat associations from ...
infores:automat-ehr-clinical-connections-kp Automat Multiomics EHRMLA Clinical Connections API released knowledge_assertion A graph consisting of clinical connections associa...
infores:bfo Basic Formal Ontology released knowledge_assertion N/A
infores:bgee Bgee released knowledge_assertion N/A
infores:bigclam Big Cell Line Association Miner deprecated statistical_association N/A
infores:bigg-models BiGG Models released knowledge_assertion a knowledgebase of genome-scale metabolic network ...
infores:biggim Big Gene Interaction Miner deprecated statistical_association N/A
infores:bindingdb BindingDB released knowledge_assertion BindingDB is a public, web-accessible database of ...
infores:bio2rdf Bio2RDF released knowledge_assertion N/A
infores:biocatalogue BioCatalogue deprecated other N/A
infores:biogrid The Biological General Repository for Interaction Datasets released knowledge_assertion N/A
infores:biolink-api BioLink API released knowledge_assertion API integration layer for linked biological object...
infores:biolink-model-lookup Biolink Model Lookup released knowledge_assertion Biolink Model Lookup service.
infores:biolink-ontology Biolink ontology released knowledge_assertion N/A
infores:bioportal National Center for Biomedical Ontology BioPortal released knowledge_assertion N/A
infores:biothings-biggim-1 Big GIM 1 API deprecated knowledge_assertion Documentation of the Big GIM 1 KP query web servic...
infores:biothings-dgidb BioThings DGIdb API released mixed Documentation of the BioThings DGIdb query web ser...
infores:biothings-diseases BioThings DISEASES API released mixed Documentation of the DISEASES query web services.
infores:biothings-ebi-gene2phenotype BioThings EBIgene2phenotype API released knowledge_assertion Documentation of the EBIgene2phenotype query web s...
infores:biothings-explorer BioThings Explorer released prediction N/A
infores:service-provider-trapi Service Provider TRAPI endpoints released other N/A
infores:biothings-go-bp BioThings Gene Ontology Biological Process API released knowledge_assertion Documentation of the Gene Ontology Biological Proc...
infores:biothings-go-cc BioThings Gene Ontology Cellular Component API released knowledge_assertion Documentation of the Gene Ontology Cellular Compon...
infores:biothings-go-mf BioThings Gene Ontology Molecular Activity API released knowledge_assertion Documentation of the Gene Ontology Molecular Activ...
infores:biothings-hpo BioThings Human Phenotype Ontology API released knowledge_assertion Documentation of the HPO query web services.
infores:biothings-idisk BioThings iDISK API released mixed N/A
infores:biothings-mgi-g2p BioThings MGIgene2phenotype API released knowledge_assertion Documentation of the MGIgene2phenotype query web s...
infores:biothings-multiomics-biggim-drugresponse Multiomics BigGIM-DrugResponse KP API released knowledge_assertion Documentation of the Drug Response KP query web se...
infores:biothings-multiomics-ehr-risk Multiomics EHR Risk KP API modified statistical_association Documentation of the Multiomics Electronic-Health-...
infores:catrax-pharmacogenomics Multiomics Pharmacogenomics KP API released knowledge_assertion Documentation of the Pharmacogenomics KP query web...
infores:providence-st-joseph-ehr Providence St. Joseph EHR Data released knowledge_assertion A partnership with Providence/Swedish Health Servi...
infores:isb-EHRMLA-data Multiomics EHRMLA May Treat API released prediction Documentation of the Multiomics Electronic-Health-...
infores:isb-EHRMLA-clinicalconnections Multiomics EHRMLA Clinical Connections API released prediction Documentation of the Multiomics Electronic-Health-...
infores:biothings-multiomics-wellness Multiomics Wellness KP API released statistical_association Documentation of the Multiomics Wellness KP query ...
infores:multiomics-clinicaltrials Multiomics ClinicalTrials KP API released knowledge_assertion N/A
infores:biothings-multiomics-clinicaltrials Multiomics ClinicalTrials KP API deprecated knowledge_assertion N/A
infores:multiomics-drugapprovals Multiomics Drug Approvals KP API released knowledge_assertion N/A
infores:multiomics-multiomics Multiomics KP API released knowledge_assertion N/A
infores:multiomics-microbiome Multiomics Microbiome KP API released knowledge_assertion N/A
infores:biothings-pfocr BioThings PFOCR API modified prediction Documentation of the pfocr query web services.
infores:pfocr PFOCR released prediction N/A
infores:biothings-semmeddb BioThings SEMMEDDB API released not_provided Documentation of the BioThings SEMMEDDB query web ...
infores:biothings-semmeddb-anatomy SEMMED Anatomy API deprecated not_provided Documentation of the SEMMED disease query web serv...
infores:biothings-semmeddb-biological-process SEMMED Biological Process API deprecated not_provided Documentation of the SEMMED disease query web serv...
infores:biothings-semmeddb-chemical SEMMED Chemical API deprecated not_provided Documentation of the SEMMED disease query web serv...
infores:biothings-semmeddb-disease SEMMED Disease API deprecated not_provided Documentation of the SEMMED disease query web serv...
infores:biothings-semmeddb-gene SEMMED Gene API deprecated not_provided Documentation of the SEMMED disease query web serv...
infores:biothings-semmeddb-phenotype SEMMED Phenotype API deprecated not_provided Documentation of the SEMMED disease query web serv...
infores:biothings-tcga-mut-freq Multiomics TCGA Mutation Frequency KP API deprecated statistical_association Documentation of the TCGA Mutation Frequency KP qu...
infores:biothings-uberon-ontology BioThings UBERON Ontology API released knowledge_assertion Documentation of the UBERON query web services.
infores:biothings-rhea BioThings Rhea API released knowledge_assertion Documentation of the BioThings Rhea query web serv...
infores:rhea Rhea released knowledge_assertion https://www.rhea-db.org/
infores:biothings-bioplanet-pathway-disease BioThings BioPlanet Pathway-Disease API released knowledge_assertion Documentation of the BioThings [BioPlanet](https:/...
infores:biothings-bioplanet-pathway-gene BioThings BioPlanet Pathway-Gene API released knowledge_assertion Documentation of the BioThings [BioPlanet](https:/...
infores:bioplanet BioPlanet released knowledge_assertion https://tripod.nih.gov/bioplanet/#
infores:biothings-bindingdb BioThings BindingDB API released mixed Documentation of the BioThings [BindingDB](https:/...
infores:bspo Biological Spatial Ontology released knowledge_assertion N/A
infores:dailymed DailyMed released knowledge_assertion The DailyMed database contains labeling, submitted...
infores:wbbt C. elegans Gross Anatomy Ontology released knowledge_assertion A structured controlled vocabulary of the anatomy ...
infores:wbphenotype C. elegans phenotype released knowledge_assertion A structured controlled vocabulary of Caenorhabdit...
infores:cam-kp CAM-KP API released knowledge_assertion TRAPI interface to database of Causal Activity Mod...
infores:campfhir Clinical Asset Mapping Program for FHIR deprecated knowledge_assertion N/A
infores:cellmarker CellMarker 2.0 released knowledge_assertion N/A
infores:chebi Chemical Entity of Biological Interest released knowledge_assertion a freely available dictionary of molecular entitie...
infores:chem2bio2rdf Chem2bio2RDF deprecated knowledge_assertion N/A
infores:chembank ChemBank deprecated knowledge_assertion Initiative for Chemical Genetics contract from the...
infores:chembio ChemBio deprecated knowledge_assertion N/A
infores:chembl ChEMBL released knowledge_assertion a manually knowledge_assertion database of bioacti...
infores:chemotext Chemotext deprecated knowledge_assertion N/A
infores:civic Clinital Interpretation of Variants in Cancer released knowledge_assertion N/A
infores:cl Cell Ontology released knowledge_assertion N/A
infores:clingen Clinical Genome Resource (ClinGen) released knowledge_assertion ClinGen is a NIH-funded resource dedicated to buil...
infores:clinical-profiles Clinical Profiles deprecated knowledge_assertion N/A
infores:clinicaltrials ClinicalTrials.gov released knowledge_assertion N/A
infores:clinvar ClinVar released knowledge_assertion ClinVar is a freely accessible, public archive of ...
infores:cmap Connectivity Map released knowledge_assertion genome-scale library of cellular signatures that c...
infores:columbia-cdw-ehr-data Columbia Clinical Data Warehouse for Health Patient EHR Data released knowledge_assertion The Columbia Clinical Data Warehouse (CDW) contain...
infores:cohd Columbia Open Health Data (COHD) released statistical_association The Columbia Open Health Data (COHD) API provides ...
infores:cohd-covid Columbia Open Health Data (COHD) for COVID-19 Research released statistical_association The Columbia Open Health Data (COHD) for COVID-19 ...
infores:cohd-covid19-api Columbia Open Health Data for COVID-19 Research API deprecated knowledge_assertion N/A
infores:connections-hypothesis Connections Hypothesis Provider API released prediction A Translator Reasoner API for the Connections Hypo...
infores:cord19 COVID-19 Open Research Dataset deprecated knowledge_assertion N/A
infores:cord19-scibite COVID-19 Open Research Dataset Scibite deprecated knowledge_assertion N/A
infores:cosmic Catalog of Somatic Mutations in Cancer released knowledge_assertion N/A
infores:covid-phenotypes Covid Phenotypes deprecated knowledge_assertion N/A
infores:cpdb ConsensusPathDB released mixed N/A
infores:cpt-codes-umls Current Procedural Terminology (CPT) Codes (from UMLS) deprecated knowledge_assertion N/A
infores:cqs Translator knowledge_assertion Query Service released prediction The Translator Curated Query Service (CQS) is an S...
infores:ctd Comparative Toxicogenomics Database released knowledge_assertion A robust, publicly available database that aims to...
infores:ctrp Cancer Therapeutics Response Portal released statistical_association links genetic, lineage, and other cellular feature...
infores:date Drugs to target pAthways by the Tissue Expression released knowledge_assertion N/A
infores:dbsnp Single Nucleotide Polymorphism Database released knowledge_assertion N/A
infores:dda Dictyostelium discoideum anatomy released knowledge_assertion N/A
infores:delta-qt-db delta QT Database deprecated knowledge_assertion N/A
infores:depmap Cancer Dependency Map released statistical_association Cancer Dependency Map to systematically identify g...
infores:dgidb Drug Gene Interaction Database released mixed information on drug-gene interactions and druggabl...
infores:dili-network-study-data Drug-Induced Liver Injury Network (DILIN) Participant Data deprecated statistical_association N/A
infores:faers FDA Adverse Event Reporting System released knowledge_assertion The FDA Adverse Event Reporting System (FAERS) is ...
infores:fbbt Drosophila gross anatomy released knowledge_assertion An ontology representing the gross anatomy of Dros...
infores:disease-ontology Disease Ontology released knowledge_assertion N/A
infores:diseases DISEASES released mixed DISEASES is a weekly updated web resource that int...
infores:disgenet DisGeNET released mixed N/A
infores:distild Diseases & Traits in LD database deprecated knowledge_assertion N/A
infores:doaf Disease Ontology Annotation Framework (DOAF) released knowledge_assertion N/A
infores:docm Database of knowledge_assertion Mutations released knowledge_assertion N/A
infores:drug-repurposing-hub Drug Repurposing Hub released knowledge_assertion knowledge_assertion and annotated collection of FD...
infores:drugbank DrugBank released knowledge_assertion A comprehensive, free-to-access, online database c...
infores:drugcentral DrugCentral released knowledge_assertion Online drug information resource created and maint...
infores:drugmechdb DrugMechDB released knowledge_assertion A database of paths that represent the mechanism o...
infores:ebi European Bioinformatics Institute released knowledge_assertion N/A
infores:ebi-gene2phenotype European Bioinformatics Institute Gene to Phenotype Resource modified knowledge_assertion N/A
infores:ebi-proteins EBI Proteins API released knowledge_assertion The Proteins REST API provides access to key biolo...
infores:ebi-quick-go QuickGO API released knowledge_assertion The QuickGO REST API provides access to key biolog...
infores:eco Evidence & Conclusion Ontology released knowledge_assertion N/A
infores:ecto Environmental conditions, treatments and exposures ontology released knowledge_assertion N/A
infores:eram eRAM: encyclopedia of rare disease annotations for precision medicine released knowledge_assertion encyclopedia of rare disease annotations for preci...
infores:efo Experimental Factor Ontology released knowledge_assertion N/A
infores:ehdaa2 Human Developmental Anatomy Ontology released knowledge_assertion N/A
infores:ensembl-gene Ensembl gene released knowledge_assertion N/A
infores:entrez Entrez released knowledge_assertion N/A
infores:epsd EPSD released not_provided N/A
infores:erc-analysis Evolutionary Rate Covariation (ERC) Analysis deprecated statistical_association N/A
infores:explanatory-agent Explanatory Agent API deprecated prediction A Translator Reasoner API for the Explanatory Agen...
infores:fhir-pit FHIR Patient data Integration Tool deprecated knowledge_assertion N/A
infores:fma-obo Foundational Model of Anatomy Ontology (FMA -- both from UMLS and from OBO) released knowledge_assertion N/A
infores:fma-umls Foundational Model of Anatomy Ontology (FMA -- both from UMLS and from OBO) released knowledge_assertion N/A
infores:fooddb Food Database released knowledge_assertion N/A
infores:foodon Food Ontology released knowledge_assertion N/A
infores:gdc National Cancer Institute Genomic Data Commons Data Portal released knowledge_assertion N/A
infores:gdsc Genomics of Drug Sensitivity in Cancer released knowledge_assertion N/A
infores:genage GenAge Database of Ageing-Related Genes released knowledge_assertion N/A
infores:gencc The Gene Curation Coalition (GenCC) released knowledge_assertion The GenCC DB provides information pertaining to th...
infores:gendr GenDR Database of Dietary Restriction-Related Genes released knowledge_assertion N/A
infores:genebass Genebass: Gene-based association summary statistics released knowledge_assertion Genebass is a resource of exome-based association ...
infores:genepio Genomic Epidemiology Ontology released knowledge_assertion N/A
infores:geneprof GeneProf released knowledge_assertion underlying resource is throwing 404 error atm
infores:genetics-data-provider Genetics KP released knowledge_assertion TRAPI 1.1 endpoint for the NCATS Biomedical Transl...
infores:ghr Genetics Home Reference released knowledge_assertion N/A
infores:gnbr Global Network of Biomedical Relationships released knowledge_assertion N/A
infores:go Gene Ontology released knowledge_assertion N/A
infores:go-cam Gene Ontology Causal Activity Model Annotations released knowledge_assertion N/A
infores:aop-cam Adverse Outcome Pathways Casual Activity Models released knowledge_assertion N/A
infores:go-plus Gene Ontology Plus released knowledge_assertion N/A
infores:human-goa Human Gene Ontology Annotations released knowledge_assertion N/A
infores:goa Gene Ontology Annotations released knowledge_assertion N/A
infores:gote GOTE (Gpcrs to dOwnstream cellular pathways byTissue Expression) deprecated knowledge_assertion N/A
infores:gtrx Genome-to-Treatment released knowledge_assertion N/A
infores:gtex Genotype-Tissue Expression released knowledge_assertion N/A
infores:gtopdb Guide to Pharmacology released knowledge_assertion An expert-knowledge_assertion resource of ligand-a...
infores:gwas-catalog GWAS Catalog released statistical_association N/A
infores:hcp-codes-umls Healthcare Common Procedure Coding System (from UMLS) released knowledge_assertion N/A
infores:hcpcs-cpt-umls HCPCS Version of Current Procedural Terminology (HCPT) (from UMLS) released knowledge_assertion N/A
infores:hetionet Hetionet released knowledge_assertion N/A
infores:hgnc HUGO Gene Nomenclature Committee released knowledge_assertion N/A
infores:hl7-umls Health Level Seven (HL7) (from UMLS) released knowledge_assertion N/A
infores:hmdb Human Metabolome Database released knowledge_assertion A freely available electronic database containing ...
infores:homologene HomoloGene released knowledge_assertion N/A
infores:hopkins-synthetic-patient-data Hopkins Synthetic Patient Data deprecated knowledge_assertion N/A
infores:hpa Human Protein Atlas released knowledge_assertion The Human Protein Atlas is a Swedish-based program...
infores:hpo Human Phenotype Ontology released knowledge_assertion N/A
infores:hpo-annotations Human Phenotype Ontology released knowledge_assertion N/A
infores:icd10cm ICD10 Clinical Modification released knowledge_assertion N/A
infores:icd11-foundation ICD11 Foundation released knowledge_assertion N/A
infores:icd10-umls ICD10 (from UMLS) released knowledge_assertion N/A
infores:icd10ae-umls ICD10AE (from UMLS) released knowledge_assertion N/A
infores:icd10cm-umls ICD10CM (from UMLS) released knowledge_assertion N/A
infores:icd10pcs-umls ICD10PCS (from UMLS) released knowledge_assertion N/A
infores:icd9cm-umls ICD9CM (from UMLS) released knowledge_assertion N/A
infores:icees-kg ICEES (Integrated Clinical and Environmental Exposures Service) released statistical_association Information Resource
infores:idisk integrated Dietary Supplement Knowledge Base released mixed https://www.ncbi.nlm.nih.gov/pmc/articles/PMC70755...
infores:improving-agent imProving Agent released prediction imProving Agent OpenAPI TRAPI Specification
infores:indigo-reasoner OpenAPI for indigo NCATS Biomedical Translator Reasoner deprecated knowledge_assertion OpenAPI for indigo NCATS Biomedical Translator Rea...
infores:ino Interaction Network Ontology released knowledge_assertion N/A
infores:intact IntAct released knowledge_assertion N/A
infores:interactome-ccsb Interactome Projects at CCSB released knowledge_assertion N/A
infores:interpro InterPro released knowledge_assertion N/A
infores:inxight-drugs Inxight: Drugs released knowledge_assertion NCATS Inxight Drugs contains information on ingred...
infores:iproclass iProClass released knowledge_assertion N/A
infores:iptm-net iPTMNet released not_provided A bioinformatics resource for integrated understan...
infores:irefindex iRefIndex released knowledge_assertion N/A
infores:isb-incov Institute for Systems Biology COVID-19 Immune Response Study released knowledge_assertion N/A
infores:isb-wellness Institute for Systems Biology Scientific Wellness released knowledge_assertion N/A
infores:kegg Kyoto Encyclopedia of Genes and Genomes (KEGG) released knowledge_assertion N/A
infores:kgea Knowledge Graph Exchange Archive deprecated knowledge_assertion N/A
infores:kinace KinAce released knowledge_assertion https://kinace.kinametrix.com/#section-about The K...
infores:kinomescan KINOMEscan released other N/A
infores:knowledge-collaboratory Translator Knowledge Collaboratory API released knowledge_assertion Translator Reasoner API for the Knowledge Collabor...
infores:life-science-resource-registry Life Science Resource Registry released knowledge_assertion N/A
infores:lincs Library of Integrated Network-Based Cellular Signatures released knowledge_assertion N/A
infores:linkedspl Linked Structured Product Labels deprecated knowledge_assertion N/A
infores:litvar LitVar API released knowledge_assertion LitVar allows the search and retrieval of variant ...
infores:loinc Logical Observation Identifiers Names and Codes released knowledge_assertion N/A
infores:loinc-umls LOINC (from UMLS) released knowledge_assertion N/A
infores:mp Mammalian Phenotype Ontology released knowledge_assertion Standard terms for annotating mammalian phenotypic...
infores:maxo Medical Action Ontology released knowledge_assertion see also https://github.com/monarch-initiative/MAx...
infores:meddra-umls MedDRA (from UMLS) released knowledge_assertion N/A
infores:medgen MedGen released knowledge_assertion N/A
infores:medlineplus MedlinePlus (from UMLS) released knowledge_assertion N/A
infores:medrt-umls Medication Reference Terminology (MED-RT) (from UMLS) released knowledge_assertion N/A
infores:mesh Medical Subject Headings Thesaurus released knowledge_assertion N/A
infores:metacyc MetaCyc Metabolic Pathway Database released knowledge_assertion N/A
infores:emapa Mouse Developmental Anatomy Ontology released knowledge_assertion An ontology for mouse anatomy covering embryonic d...
infores:mgi Mouse Genome Informatics released knowledge_assertion N/A
infores:mpath Mouse pathology ontology released knowledge_assertion A structured controlled vocabulary of mutant and t...
infores:mi Molecular Interactions Controlled Vocabulary released knowledge_assertion N/A
infores:mirbase The microRNA Database released knowledge_assertion N/A
infores:mirgate MiRGate released knowledge_assertion N/A
infores:molepro Molecular Data Provider for NCATS Biomedical Translator Reasoners released knowledge_assertion Molecular Data Provider for NCATS Biomedical Trans...
infores:monarch-data SciGraph-Monarch-Data deprecated knowledge_assertion N/A
infores:monarch-ontology SciGraph-Monarch-Ontology deprecated other N/A
infores:monarchinitiative Monarch Initiative released knowledge_assertion N/A
infores:mondo MONDO Disease Ontology released knowledge_assertion N/A
infores:mop Molecular Process Ontology released knowledge_assertion N/A
infores:mousemine Mouse Genome Informatics Mousemine released knowledge_assertion N/A
infores:msigdb Molecular Signatures Database released knowledge_assertion N/A
infores:mychem-info MyChem.info API released mixed Documentation of the MyChem.info chem query web se...
infores:mydisease-info MyDisease.info API released mixed Documentation of the MyDisease.info disease query ...
infores:mygene-info MyGene.info API released mixed Documentation of the MyGene.info Gene Query web se...
infores:myvariant-info MyVariant.info API released mixed Documentation of the MyVariant.info Variant Query ...
infores:nanopublications Nanopublications Network released knowledge_assertion N/A
infores:nbo Neuro Behavior Ontology released knowledge_assertion N/A
infores:ncats-ars National Center for Advancing Translational Science Biomedical Data Translator Autonomous Relay System released knowledge_assertion N/A
infores:ncbi-gene National Center for Biotechnology Information Gene released knowledge_assertion N/A
infores:ncbi-taxon NCBI Taxonomy Ontology released knowledge_assertion N/A
infores:ncbi-taxonomy NCBI Taxonomy released knowledge_assertion N/A
infores:ncdeq-cafo-exposures-data North Carolina Department of Environmental Quality Concentrated Animal Feeding Operations Exposures Data deprecated knowledge_assertion N/A
infores:ncdeq-landfill-exposures-data North Carolina Department of Environmental Quality Landfill Exposures Data deprecated knowledge_assertion N/A
infores:nces-schools-exposure-data NCES public school exposures data deprecated knowledge_assertion N/A
infores:ncit National Cancer Institute Thesaurus released knowledge_assertion N/A
infores:ndcd National Drug Code Directory released knowledge_assertion N/A
infores:nddf-umls National Drug Data File (NDDF) (from UMLS) deprecated N/A
infores:ndex NDEx deprecated knowledge_assertion N/A
infores:ndfrt National Drug File - Reference Terminology (NDF-RT) (from UMLS) released knowledge_assertion N/A
infores:nexo-align NEXO Align Ontology deprecated knowledge_assertion N/A
infores:nexo-construct NEXO Construct Ontology deprecated knowledge_assertion N/A
infores:niehs-epr-study-datae NIEHS Environmental Polymorphisms Registry deprecated knowledge_assertion N/A
infores:nsides nSides released knowledge_assertion N/A
infores:openhealthdata-carolina Open Health Data @ Carolina released statistical_association Open Health Data @ Carolina provides access to cou...
infores:ols Ontology Lookup Service API released knowledge_assertion The OLS REST API provides access to key biological...
infores:omicsdi OmicsDI released knowledge_assertion N/A
infores:omim Online Mendelian Inheritance in Man (OMIM) released knowledge_assertion N/A
infores:omnicorp OmniCorp released knowledge_assertion N/A
infores:omop-cdm Observational Medical Outcomes Partnership Common Data Model released knowledge_assertion N/A
infores:omop-ohdsi-api Observational Medical Outcomes Partnership Observational Health Data Sciences and Informatics API released knowledge_assertion N/A
infores:open-targets Open Targets released knowledge_assertion N/A
infores:openpredict OpenPredict API released prediction N/A
infores:ordo Orphanet Rare Disease Ontology released knowledge_assertion N/A
infores:orphanet Orphanet released knowledge_assertion N/A
infores:owlsim OWLSim Ontology Based Profile Matching released knowledge_assertion N/A
infores:oxo Ontology Xref Service released knowledge_assertion N/A
infores:panther Panther Classification System released other N/A
infores:path-pheno-db PathoPhenoDB released knowledge_assertion N/A
infores:pathway-commons Pathway Commons released knowledge_assertion N/A
infores:pathwhiz PathWhiz released knowledge_assertion N/A
infores:pato Phenotype and Trait Ontology released knowledge_assertion N/A
infores:phenio Phenomics Integrated Ontology released knowledge_assertion An ontology for accessing and comparing knowledge ...
infores:patric Pathosystems Resource Integration Center released knowledge_assertion N/A
infores:pgxmine Text Mined pharmacogenomic polymorphisms released knowledge_assertion Text mined pharmacogenomic polymorphisms to assist...
infores:pdsp Psychoactive Drug Screening Program released other This service provides screening of novel psychoact...
infores:pdq-umls Physician Data Query (PDQ) (from UMLS) released knowledge_assertion N/A
infores:pfam Pfam released knowledge_assertion The Pfam database is a large collection of protein...
infores:pharmacotherapydb Pharmacotherapy Database released knowledge_assertion N/A
infores:pharmgkb Pharmacogenomics Knowledgebase released knowledge_assertion N/A
infores:pharos Pharos released knowledge_assertion focusing on three of the most commonly drug-target...
infores:psite-plus PhosphoSitePlus released knowledge_assertion provides comprehensive information and tools for t...
infores:pr Protein Ontology released knowledge_assertion N/A
infores:prefixcommons Prefix Commons deprecated knowledge_assertion N/A
infores:preppi PrePPI released prediction N/A
infores:primekg PrimeKG, Precision Medicine Knowledge Graph released knowledge_assertion N/A
infores:probe-miner Probe Miner released statistical_association N/A
infores:psy-umls Psychological Index Terms (PSY) (from UMLS) released knowledge_assertion N/A
infores:pubchem PubChem released knowledge_assertion an open chemistry database at the National Institu...
infores:pubmed PubMed released knowledge_assertion N/A
infores:pubmed-central PubMed Central released knowledge_assertion N/A
infores:quickgo QuickGO deprecated knowledge_assertion N/A
infores:reactome Reactome released knowledge_assertion N/A
infores:renci-bionames RENCI BioNames released knowledge_assertion N/A
infores:repodb Drug Repositioning Database released knowledge_assertion N/A
infores:rgd RGD API released knowledge_assertion The RGD API
infores:ro Relations Ontology released knowledge_assertion N/A
infores:robokop ROBOKOP deprecated knowledge_assertion An API for answering biomedical questions
infores:robokop-kg ROBOKOP KG released knowledge_assertion N/A
infores:robokop-kp ROBOKOP (Reasoning Over Biomedical Objects linked in Knowledge-Oriented Pathway) deprecated knowledge_assertion N/A
infores:robokp-ranker ROBOKOP Ranker deprecated knowledge_assertion An API for answering biomedical questions
infores:rtx-kg2 RTX KG2 released knowledge_assertion TRAPI 1.1 endpoint for the NCATS Biomedical Transl...
infores:rxnorm RxNorm released knowledge_assertion normalized names for clinical drugs and links its ...
infores:sabio-rk SABIO-RK Biochemical Reaction Kinetics Database released knowledge_assertion N/A
infores:scibite Semantic Analytics & Clean Data Intelligence Experts released not_provided N/A
infores:semmeddb Semantic Medline Database released not_provided N/A
infores:sgd Saccharomyces Genome Database released knowledge_assertion N/A
infores:sider SIDER released knowledge_assertion N/A
infores:signor SIGNOR 3.0 released knowledge_assertion N/A
infores:smart-api SmartAPI API released knowledge_assertion This is the API provided from SmartAPI, https://sm...
infores:smartapi SmartAPI API deprecated knowledge_assertion This is the API provided from SmartAPI, https://sm...
infores:smpdb Small Molecule Pathway Database (SMPDB) released knowledge_assertion N/A
infores:snomedct Systemized Nomenclature of Medicine released knowledge_assertion N/A
infores:snpeff SnpEff released prediction Genetic variant annotation and functional effect p...
infores:so Sequence Ontology released knowledge_assertion N/A
infores:spoke SPOKE KP released knowledge_assertion SPOKE KP - an NIH NCATS Knowledge Provider to expo...
infores:sri-edge-normalization-service Edge Normalization Service deprecated knowledge_assertion SRI service to validate and normalize edges to Tra...
infores:sri-name-resolver Name Resolver released knowledge_assertion Service to resolve Translator concept names.
infores:sri-node-normalizer Node Normalization released knowledge_assertion Node normalization takes a CURIE, and returns reso...
infores:sri-ontology Ontology-KP API deprecated knowledge_assertion TRAPI interface to integrated ontology knowledgeba...
infores:sri-reference-kg SRI Reference Knowledge Graph API deprecated knowledge_assertion The SRI reference KG aims to aggregate knowledge s...
infores:sri-semmeddb SRI SemMedDb KGX File Set deprecated knowledge_assertion The SRI Semantic Medline Database is a Biolink Mod...
infores:startgeo STAR GEO Search Application released knowledge_assertion N/A
infores:stitch STITCH released knowledge_assertion Database of known and prediction interactions betw...
infores:strider Strider deprecated knowledge_assertion Translator Autonomous Relay Agent
infores:string Search Tool for the Retrieval of Interacting Genes/Proteins released knowledge_assertion N/A
infores:symp Symptom Ontology released knowledge_assertion N/A
infores:tcga The Cancer Genome Atlas released knowledge_assertion N/A
infores:tcrd Target Central Resource Database released knowledge_assertion N/A
infores:tiga Target Illumination GWAS Analytics released knowledge_assertion Aggregating and assessing experimental evidence fo...
infores:textmining-kp Text Mining KP deprecated not_provided N/A
infores:text-mining-provider-cooccurrence Text Mining COOCCURRENCE API released not_provided API serving a knowledge graph comprised of pairs o...
infores:text-mining-provider-targeted Text Mining Targeted Association API released not_provided API serving explicitly targeted Biolink Associatio...
infores:tissues-expression-db Tissue Expression Database released knowledge_assertion N/A
infores:topmed NHLBI Trans-Omics for Precision Medicine released knowledge_assertion N/A
infores:ttd Therapeutic Target Database (TTD) released knowledge_assertion TTD is a database providing information about the ...
infores:ubergraph Ubergraph released knowledge_assertion A graph representation of Ubergraph, an integratio...
infores:uberon Uber Anatomy Ontology released knowledge_assertion N/A
infores:umls Unified Medical Language System released knowledge_assertion N/A
infores:umls-metathesaurus UMLS Metathesaurus (MTH) (from UMLS) released knowledge_assertion N/A
infores:unc-cdwh-ehr-data UNC Carolina Data Warehouse for Health Patient EHR Data deprecated knowledge_assertion N/A
infores:unichem UniChem released knowledge_assertion N/A
infores:uniprot UniProt Knowledgebase released knowledge_assertion N/A
infores:uniref UniRef released knowledge_assertion N/A
infores:unsecret-agent Unsecret Agent OpenAPI for NCATS Biomedical Translator Reasoners released prediction OpenAPI for NCATS Biomedical Translator Reasoners
infores:us-census-acs-data United States Census Bureau American Community Survey Data deprecated knowledge_assertion N/A
infores:us-census-tiger-roadway-exposures-data United States Census Bureau TIGER/line Roadway Data deprecated knowledge_assertion N/A
infores:us-dot-roadway-exposures-data United States Department of Transportation Roadway Exposures Data deprecated knowledge_assertion N/A
infores:us-epa-airborne-pollutant-exposures-data United States Environmental Protection Agency Airborne Pollutant Exposures Data deprecated knowledge_assertion N/A
infores:upheno Unified phenotype ontology released knowledge_assertion The uPheno ontology integrates multiple phenotype ...
infores:vandf-umls Veterans Association National Drug File (VANDF) (from UMLS) released knowledge_assertion N/A
infores:wikidata Wikidata released knowledge_assertion N/A
infores:wikidata-garbanzo Wikidata Garbanzo released knowledge_assertion N/A
infores:wikipathways WikiPathways released knowledge_assertion WikiPathways is an open science platform for biolo...
infores:xpo Xenopus Phenotype Ontology released knowledge_assertion XPO represents anatomical, cellular, and gene func...
infores:workflow-runner Translator Workflow Runner released knowledge_assertion Translator general purpose workflow runner
infores:wormbase WormBase released knowledge_assertion N/A
infores:zfa Zebrafish anatomy and development ontology released knowledge_assertion A structured controlled vocabulary of the anatomy ...
infores:zfin Zebrafish Information Network released knowledge_assertion N/A
infores:ddinter DDinter released knowledge_assertion DDInter is an open-access database specific to dru...
infores:ki-database Ki database released knowledge_assertion The Ki database serves as a data warehouse for pub...
infores:community-sar Community Structure-Activity Resource released knowledge_assertion CSAR disseminated experimental datasets of crystal...
infores:drug-design Drug Design Data Resource released knowledge_assertion The Drug Design Data Resource (D3R) aims to advanc...
infores:aeolus Adverse Event Open Learning through Universal Standardization (AEOLUS) released knowledge_assertion A knowledge_assertion and standardized version of ...
infores:regl Richards Effector Gene List released knowledge_assertion An effector index to predict target genes at GWAS ...
infores:huri The Human Reference Protein Interactome Mapping Project released knowledge_assertion A human ‘all-by-all’ reference interactome map of ...
infores:zp Zebrafish Phenotype Ontology released knowledge_assertion The Zebrafish Phenotype Ontology formally defines ...
infores:flybase FlyBase released knowledge_assertion A Database of Drosophila Genes & Genomes
infores:xenbase Xenbase released knowledge_assertion Xenbase's mission is to provide the international ...
infores:biothings-rare-source BioThings RARe-SOURCE API released knowledge_assertion Documentation of the BioThings API for [NCATS RARe...
infores:rare-source NCATS RARe-SOURCE released knowledge_assertion Integrated Bioinformatics Resource for Rare Diseas...
infores:sri-answer-appraiser SRI Answer Appraiser released knowledge_assertion N/A
infores:biothings-suppkg BioThings SuppKG API released not_provided Documentation of the BioThings API for [SuppKG](ht...
infores:suppkg SuppKG released not_provided SuppKG contains relations between dietary suppleme...
infores:biothings-ddinter BioThings DDInter API released knowledge_assertion Documentation of the BioThings API for [DDInter](h...
infores:biothings-gtrx BioThings GTRx API released knowledge_assertion Documentation of the BioThings API for [Genome-to-...
infores:biothings-ttd Biothings Therapeutic Target Database API released knowledge_assertion Documentation of the BioThings API for [Therapeuti...
infores:rampdb RaMPDB released mixed RaMP-DB (Relational database of Metabolomic Pathwa...
infores:biothings-agr BioThings AGR API released knowledge_assertion Documentation of the BioThings API for [AGR](https...
infores:innatedb InnateDB released mixed InnateDB is a publicly available database of the g...
infores:biothings-innatedb BioThings InnateDB API released mixed Documentation of the BioThings API for [InnateDB](...
infores:iptmnet iPTMnet released mixed iPTMnet is a bioinformatics resource for integrate...
infores:fda-orphan-drug-db FDA Orphan Drug Project designation database released knowledge_assertion Resource for searching FDA Orphan Drug Designation...
infores:complex-portal Complex Portal released knowledge_assertion The Complex Portal is a manually curated, encyclop...
infores:biothings-repodb BioThings repoDB API released knowledge_assertion Documentation of the BioThings API for [repoDB](ht...
infores:biothings-hmdb BioThings HMDB API released knowledge_assertion Documentation of the BioThings API for [HMDB](http...
infores:fooddata-central FoodData Central released knowledge_assertion FoodData Central is an integrated data system that...
infores:biothings-fooddata-central BioThings FoodData Central API released knowledge_assertion Documentation of the BioThings API for [FoodData ...
infores:biothings-foodb BioThings FooDB API released knowledge_assertion Documentation of the BioThings API for [FooDB](htt...
infores:tissues TISSUES released mixed TISSUES is a weekly updated web resource that inte...
infores:biothings-tissues BioThings TISSUES API released mixed Documentation of the BioThings API for [TISSUES](h...
infores:mygeneset-info MyGeneset.info API released other MyGeneset allows scientists to conveniently collec...
infores:gelinea released not_provided N/A
infores:automat-binding-db released not_provided N/A
infores:automat-reactome released not_provided N/A
infores:automat-robokop released not_provided N/A
infores:ars released not_provided N/A
infores:chv-umls released not_provided N/A
infores:annotator Annotator Service released knowledge_assertion Service to provide detailed annotations for any gi...
infores:dsstoxdb released not_provided N/A
infores:omop-ohdsi released not_provided N/A
infores:phenopacket-store PhenoPacket Store released observation A repository for storage and retrieval of phenopac...
infores:biothings-mabs released not_provided N/A
infores:sepid_mab released not_provided N/A
infores:amyco The Amyloidoses Collection (AmyCo) Database released knowledge_assertion The Amyloidoses Collection (AmyCo) database contai...
infores:catrax-pharmacogenomics released not_provided N/A
infores:unii released not_provided N/A