Slot: subject_form_or_variant_qualifier
Description: A qualifier that composes with a core subject/object concept to define a specific type, variant, alternative version of this concept. The composed concept remains a subtype or instance of the core concept. For example, the qualifier ‘mutation’ combines with the core concept ‘Gene X’ to express the compose concept ‘a mutation of Gene X’. This qualifier specifies a change in the subject of an association (aka: statement).
Domain: Association
Range: String
Inheritance
- association_slot
- qualifier
- form_or_variant_qualifier
- subject_form_or_variant_qualifier
- form_or_variant_qualifier
- qualifier
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ChemicalGeneInteractionAssociation | describes a physical interaction between a chemical entity and a gene or gene product. Any biological or chemical effect resulting from such an interaction are out of scope, and covered by the ChemicalAffectsGeneAssociation type (e.g. impact of a chemical on the abundance, activity, structure, etc, of either participant in the interaction) | yes |
| PredicateMapping | A deprecated predicate mapping object contains the deprecated predicate and an example of the rewiring that should be done to use a qualified statement in its place. | no |
| ChemicalAffectsGeneAssociation | Describes an effect that a chemical has on a gene or gene product (e.g. an impact of on its abundance, activity,localization, processing, expression, etc.) | yes |
| GeneHasVariantThatContributesToDiseaseAssociation | None | no |
| GeneAffectsChemicalAssociation | Describes an effect that a gene or gene product has on a chemical entity (e.g. an impact of on its abundance, activity, localization, processing, transport, etc.) | yes |
Example values
| Slot Name | Value |
|---|---|
| subject_form_or_variant_qualifier | mutation |
| subject_form_or_variant_qualifier | late stage |
| subject_form_or_variant_qualifier | severe |
| subject_form_or_variant_qualifier | transplant |
| subject_form_or_variant_qualifier | chemical analog |
LinkML Source
name: subject form or variant qualifier
description: 'A qualifier that composes with a core subject/object concept to define
a specific type, variant, alternative version of this concept. The composed concept
remains a subtype or instance of the core concept. For example, the qualifier ‘mutation’
combines with the core concept ‘Gene X’ to express the compose concept ‘a mutation
of Gene X’. This qualifier specifies a change in the subject of an association
(aka: statement).'
examples:
- value: mutation
- value: late stage
- value: severe
- value: transplant
- value: chemical analog
in_subset:
- translator_minimal
from_schema: https://w3id.org/biolink/biolink-model
is_a: form or variant qualifier
domain: association
alias: subject_form_or_variant_qualifier
domain_of:
- predicate mapping
- chemical gene interaction association
- chemical affects gene association
- gene affects chemical association
- gene has variant that contributes to disease association
range: string