Slot: category
Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
- In a neo4j database this MAY correspond to the neo4j label tag.
- In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values
biolink:Protein
,biolink:GeneProduct
,biolink:MolecularEntity
, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence featuref
may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}
URI: biolink:named_thing_category
Domain and Range
NamedThing → 1..* CategoryType
Parents
- is_a: category
Children
Used by
- RNAProduct
- RNAProductIsoform
- AccessibleDnaRegion
- Activity
- AdministrativeEntity
- Agent
- AnatomicalEntity
- Article
- Attribute
- Bacterium
- Behavior
- BehavioralExposure
- BehavioralFeature
- BiologicalEntity
- BiologicalProcess
- BiologicalProcessOrActivity
- BiologicalSex
- BioticExposure
- Book
- BookChapter
- Case
- Cell
- CellLine
- CellularComponent
- CellularOrganism
- ChemicalEntity
- ChemicalExposure
- ChemicalMixture
- ChemicalRole
- ChiSquaredAnalysisResult
- ClinicalAttribute
- ClinicalCourse
- ClinicalEntity
- ClinicalFinding
- ClinicalIntervention
- ClinicalMeasurement
- ClinicalModifier
- ClinicalTrial
- CodingSequence
- Cohort
- CommonDataElement
- ComplexChemicalExposure
- ComplexMolecularMixture
- ConceptCountAnalysisResult
- ConfidenceLevel
- Dataset
- DatasetDistribution
- DatasetSummary
- DatasetVersion
- Device
- DiagnosticAid
- Disease
- DiseaseOrPhenotypicFeature
- DiseaseOrPhenotypicFeatureExposure
- Drug
- DrugExposure
- DrugLabel
- DrugToGeneInteractionExposure
- EnvironmentalExposure
- EnvironmentalFeature
- EnvironmentalFoodContaminant
- EnvironmentalProcess
- Event
- EvidenceType
- Exon
- Food
- FoodAdditive
- Fungus
- Gene
- GeneFamily
- GeneticInheritance
- Genome
- GenomicBackgroundExposure
- Genotype
- GenotypicSex
- GeographicExposure
- GeographicLocation
- GeographicLocationAtTime
- GrossAnatomicalStructure
- Haplotype
- Hospitalization
- Human
- IndividualOrganism
- InformationContentEntity
- Invertebrate
- JournalArticle
- LifeStage
- LogOddsAnalysisResult
- MacromolecularComplex
- Mammal
- MaterialSample
- MicroRNA
- MolecularActivity
- MolecularEntity
- MolecularMixture
- NamedThing
- NoncodingRNAProduct
- NucleicAcidEntity
- NucleicAcidSequenceMotif
- NucleosomeModification
- ObservedExpectedFrequencyAnalysisResult
- Onset
- OrganismAttribute
- OrganismTaxon
- OrganismalEntity
- Patent
- PathologicalAnatomicalExposure
- PathologicalAnatomicalStructure
- PathologicalProcess
- PathologicalProcessExposure
- Pathway
- Phenomenon
- PhenotypicFeature
- PhenotypicQuality
- PhenotypicSex
- PhysicalEntity
- PhysiologicalProcess
- PlanetaryEntity
- Plant
- Polypeptide
- PopulationOfIndividualOrganisms
- PosttranslationalModification
- PreprintPublication
- Procedure
- ProcessedMaterial
- Protein
- ProteinDomain
- ProteinFamily
- ProteinIsoform
- Publication
- ReagentTargetedGene
- RegulatoryRegion
- RelativeFrequencyAnalysisResult
- RetrievalSource
- SequenceVariant
- Serial
- SeverityValue
- SiRNA
- SmallMolecule
- Snv
- SocioeconomicAttribute
- SocioeconomicExposure
- Study
- StudyPopulation
- StudyResult
- StudyVariable
- TextMiningResult
- Transcript
- TranscriptionFactorBindingSite
- Treatment
- Vertebrate
- Virus
- WebPage
- Zygosity
Other properties
In Subsets: | translator_minimal |