Slot: category
Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
- In a neo4j database this MAY correspond to the neo4j label tag.
- In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values
biolink:Protein
,biolink:GeneProduct
,biolink:MolecularEntity
, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence featuref
may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}
URI: biolink:association_category
Domain and Range
Association → 0..* CategoryType
Parents
- is_a: category
Children
Used by
- AnatomicalEntityToAnatomicalEntityAssociation
- AnatomicalEntityToAnatomicalEntityOntogenicAssociation
- AnatomicalEntityToAnatomicalEntityPartOfAssociation
- Association
- BehaviorToBehavioralFeatureAssociation
- CaseToPhenotypicFeatureAssociation
- CausalGeneToDiseaseAssociation
- CellLineAsAModelOfDiseaseAssociation
- CellLineToDiseaseOrPhenotypicFeatureAssociation
- ChemicalAffectsGeneAssociation
- ChemicalEntityAssessesNamedThingAssociation
- ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation
- ChemicalGeneInteractionAssociation
- ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation
- ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation
- ChemicalToChemicalAssociation
- ChemicalToChemicalDerivationAssociation
- ChemicalToDiseaseOrPhenotypicFeatureAssociation
- ChemicalToPathwayAssociation
- ContributorAssociation
- CorrelatedGeneToDiseaseAssociation
- DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation
- DiseaseOrPhenotypicFeatureToLocationAssociation
- DiseaseToExposureEventAssociation
- DiseaseToPhenotypicFeatureAssociation
- DrugToGeneAssociation
- DruggableGeneToDiseaseAssociation
- EntityToDiseaseAssociation
- EntityToPhenotypicFeatureAssociation
- ExonToTranscriptRelationship
- ExposureEventToOutcomeAssociation
- ExposureEventToPhenotypicFeatureAssociation
- FunctionalAssociation
- GeneAsAModelOfDiseaseAssociation
- GeneHasVariantThatContributesToDiseaseAssociation
- GeneToDiseaseAssociation
- GeneToDiseaseOrPhenotypicFeatureAssociation
- GeneToExpressionSiteAssociation
- GeneToGeneAssociation
- GeneToGeneCoexpressionAssociation
- GeneToGeneFamilyAssociation
- GeneToGeneHomologyAssociation
- GeneToGeneProductRelationship
- GeneToGoTermAssociation
- GeneToPathwayAssociation
- GeneToPhenotypicFeatureAssociation
- GenomicSequenceLocalization
- GenotypeAsAModelOfDiseaseAssociation
- GenotypeToDiseaseAssociation
- GenotypeToGeneAssociation
- GenotypeToGenotypePartAssociation
- GenotypeToPhenotypicFeatureAssociation
- GenotypeToVariantAssociation
- InformationContentEntityToNamedThingAssociation
- MacromolecularMachineToBiologicalProcessAssociation
- MacromolecularMachineToCellularComponentAssociation
- MacromolecularMachineToMolecularActivityAssociation
- MaterialSampleDerivationAssociation
- MaterialSampleToDiseaseOrPhenotypicFeatureAssociation
- MolecularActivityToChemicalEntityAssociation
- MolecularActivityToMolecularActivityAssociation
- MolecularActivityToPathwayAssociation
- NamedThingAssociatedWithLikelihoodOfNamedThingAssociation
- OrganismTaxonToEnvironmentAssociation
- OrganismTaxonToOrganismTaxonAssociation
- OrganismTaxonToOrganismTaxonInteraction
- OrganismTaxonToOrganismTaxonSpecialization
- OrganismToOrganismAssociation
- OrganismalEntityAsAModelOfDiseaseAssociation
- PairwiseGeneToGeneInteraction
- PairwiseMolecularInteraction
- PopulationToPopulationAssociation
- ReactionToCatalystAssociation
- ReactionToParticipantAssociation
- SequenceAssociation
- SequenceFeatureRelationship
- SequenceVariantModulatesTreatmentAssociation
- TaxonToTaxonAssociation
- TranscriptToGeneRelationship
- VariantAsAModelOfDiseaseAssociation
- VariantToDiseaseAssociation
- VariantToGeneAssociation
- VariantToGeneExpressionAssociation
- VariantToPhenotypicFeatureAssociation
- VariantToPopulationAssociation
Other properties
In Subsets: | translator_minimal |