Link

Type: VariantToDiseaseAssociation

URI: biolink:VariantToDiseaseAssociation


![img](http://yuml.me/diagram/nofunky;dir:TB/class/[VariantToThingAssociation],[NamedThing]%3Cobject%201..1-%20[VariantToDiseaseAssociation relation:uriorcurie;id(i):string;negated(i):boolean%20%3F],[NamedThing]%3Csubject%201..1-%20[VariantToDiseaseAssociation],[VariantToDiseaseAssociation]uses%20-.-%3E[VariantToThingAssociation],[VariantToDiseaseAssociation]uses%20-.-%3E[EntityToDiseaseAssociation],[VariantToDiseaseAssociation]%5E-[VariantAsAModelOfDiseaseAssociation],[Association]%5E-[VariantToDiseaseAssociation],[VariantAsAModelOfDiseaseAssociation],[SeverityValue],[Publication],[Provider],[OntologyClass],[Onset],[NamedThing],[FrequencyValue],[EntityToDiseaseAssociation],[Association])

Parents

  • is_a: Association - A typed association between two entities, supported by evidence

Uses Mixins

Children

Referenced by class

Attributes

Own

Inherited from association:

  • subject REQ
    • Description: connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
    • range: NamedThing
  • relation REQ
    • Description: The relation which describes an association between a subject and an object in a more granular manner. Usually this is a term from Relation Ontology, but it can be any edge CURIE.
    • range: Uriorcurie
  • object REQ
    • Description: connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
    • range: NamedThing
  • association➞id REQ
    • Description: A unique identifier for an association
    • range: String
    • in subsets: (translator_minimal)
  • negated OPT
    • Description: if set to true, then the association is negated i.e. is not true
    • range: Boolean
  • association type OPT
    • Description: connects an association to the type of association (e.g. gene to phenotype)
    • range: OntologyClass
  • qualifiers 0..*
    • Description: connects an association to qualifiers that modify or qualify the meaning of that association
    • range: OntologyClass
  • publications 0..*
    • Description: connects an association to publications supporting the association
    • range: Publication
  • provided by 0..*
    • Description: connects an association to the agent (person, organization or group) that provided it
    • range: Provider

Inherited from entity to feature or disease qualifiers:

  • severity qualifier OPT
    • Description: a qualifier used in a phenotypic association to state how severe the phenotype is in the subject
    • range: SeverityValue
  • onset qualifier OPT
    • Description: a qualifier used in a phenotypic association to state when the phenotype appears is in the subject
    • range: Onset

Inherited from frequency qualifier mixin:

  • frequency qualifier OPT
    • Description: a qualifier used in a phenotypic association to state how frequent the phenotype is observed in the subject
    • range: FrequencyValue

Domain for slot:

Other properties

     
Comments:   TODO decide no how to model pathogenicity