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Working with Biolink Model
Browse Biolink Model
Classes
biolink:AbstractEntity
biolink:ActivityAndBehavior
biolink:AdministrativeEntity
biolink:AnatomicalEntity
biolink:AnatomicalEntityToAnatomicalEntityAssociation
biolink:AnatomicalEntityToAnatomicalEntityOntogenicAssociation
biolink:AnatomicalEntityToAnatomicalEntityPartOfAssociation
biolink:Association
biolink:Attribute
biolink:BiologicalEntity
biolink:BiologicalProcess
biolink:BiologicalProcessOrActivity
biolink:BiologicalSex
biolink:Carbohydrate
biolink:Case
biolink:CaseToPhenotypicFeatureAssociation
biolink:CaseToThingAssociation
biolink:Cell
biolink:CellLine
biolink:CellLineAsAModelOfDiseaseAssociation
biolink:CellLineToDiseaseOrPhenotypicFeatureAssociation
biolink:CellLineToThingAssociation
biolink:CellularComponent
biolink:ChemicalExposure
biolink:ChemicalSubstance
biolink:ChemicalToChemicalAssociation
biolink:ChemicalToChemicalDerivationAssociation
biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation
biolink:ChemicalToGeneAssociation
biolink:ChemicalToPathwayAssociation
biolink:ChemicalToThingAssociation
biolink:ClinicalCourse
biolink:ClinicalEntity
biolink:ClinicalIntervention
biolink:ClinicalModifier
biolink:ClinicalTrial
biolink:CodingSequence
biolink:ConfidenceLevel
biolink:DataFile
biolink:DataSet
biolink:DataSetVersion
biolink:Device
biolink:Disease
biolink:DiseaseOrPhenotypicFeature
biolink:DiseaseOrPhenotypicFeatureAssociationToLocationAssociation
biolink:DiseaseOrPhenotypicFeatureAssociationToThingAssociation
biolink:DiseaseToExposureAssociation
biolink:DiseaseToPhenotypicFeatureAssociation
biolink:DiseaseToThingAssociation
biolink:Drug
biolink:DrugExposure
biolink:EntityToPhenotypicFeatureAssociation
biolink:EnvironmentalFeature
biolink:EnvironmentalProcess
biolink:EvidenceType
biolink:Exon
biolink:ExonToTranscriptRelationship
biolink:ExposureEvent
biolink:ExposureEventToPhenotypicFeatureAssociation
biolink:FrequencyValue
biolink:FunctionalAssociation
biolink:Gene
biolink:GeneAsAModelOfDiseaseAssociation
biolink:GeneFamily
biolink:GeneHasVariantThatContributesToDiseaseAssociation
biolink:GeneOntologyClass
biolink:GeneOrGeneProduct
biolink:GeneProduct
biolink:GeneProductIsoform
biolink:GeneRegulatoryRelationship
biolink:GeneToDiseaseAssociation
biolink:GeneToExpressionSiteAssociation
biolink:GeneToGeneAssociation
biolink:GeneToGeneHomologyAssociation
biolink:GeneToGeneProductRelationship
biolink:GeneToGoTermAssociation
biolink:GeneToPhenotypicFeatureAssociation
biolink:GeneToThingAssociation
biolink:Genome
biolink:GenomicEntity
biolink:GenomicSequenceLocalization
biolink:Genotype
biolink:GenotypeAsAModelOfDiseaseAssociation
biolink:GenotypeToDiseaseAssociation
biolink:GenotypeToGeneAssociation
biolink:GenotypeToGenotypePartAssociation
biolink:GenotypeToPhenotypicFeatureAssociation
biolink:GenotypeToThingAssociation
biolink:GenotypeToVariantAssociation
biolink:GenotypicSex
biolink:GeographicLocation
biolink:GeographicLocationAtTime
biolink:GrossAnatomicalStructure
biolink:Haplotype
biolink:IndividualOrganism
biolink:InformationContentEntity
biolink:Inheritance
biolink:LifeStage
biolink:MacromolecularComplex
biolink:MacromolecularMachine
biolink:MacromolecularMachineToBiologicalProcessAssociation
biolink:MacromolecularMachineToCellularComponentAssociation
biolink:MacromolecularMachineToMolecularActivityAssociation
biolink:MaterialSample
biolink:MaterialSampleDerivationAssociation
biolink:MaterialSampleToDiseaseOrPhenotypicFeatureAssociation
biolink:MaterialSampleToThingAssociation
biolink:Metabolite
biolink:MicroRNA
biolink:MolecularActivity
biolink:MolecularEntity
biolink:NamedThing
biolink:NoncodingRNAProduct
biolink:Occurrent
biolink:Onset
biolink:OntologyClass
biolink:OrganismTaxon
biolink:OrganismalEntity
biolink:OrganismalEntityAsAModelOfDiseaseAssociation
biolink:PairwiseGeneToGeneInteraction
biolink:Pathway
biolink:Phenomenon
biolink:PhenotypicFeature
biolink:PhenotypicSex
biolink:PhysicalEntity
biolink:PhysiologicalProcess
biolink:PlanetaryEntity
biolink:PopulationOfIndividualOrganisms
biolink:PopulationToPopulationAssociation
biolink:Procedure
biolink:Protein
biolink:ProteinIsoform
biolink:Provider
biolink:Publication
biolink:QuantityValue
biolink:RNAProduct
biolink:RNAProductIsoform
biolink:ReagentTargetedGene
biolink:RelationshipType
biolink:SequenceFeatureRelationship
biolink:SequenceVariant
biolink:SequenceVariantModulatesTreatmentAssociation
biolink:SeverityValue
biolink:Snv
biolink:SourceFile
biolink:ThingToDiseaseOrPhenotypicFeatureAssociation
biolink:Transcript
biolink:TranscriptToGeneRelationship
biolink:Treatment
biolink:VariantAsAModelOfDiseaseAssociation
biolink:VariantToDiseaseAssociation
biolink:VariantToPhenotypicFeatureAssociation
biolink:VariantToPopulationAssociation
biolink:Zygosity
Mixins
biolink:DataSetSummary
biolink:DistributionLevel
biolink:EntityToDiseaseAssociation
biolink:EntityToFeatureOrDiseaseQualifiers
biolink:FrequencyQualifierMixin
biolink:FrequencyQuantifier
biolink:GeneGrouping
biolink:ModelToDiseaseMixin
biolink:PairwiseInteractionAssociation
biolink:PathognomonicityQuantifier
biolink:RelationshipQuantifier
biolink:SensitivityQuantifier
biolink:SpecificityQuantifier
biolink:SubjectOfInvestigation
biolink:ThingWithTaxon
biolink:VariantToThingAssociation
Slots
biolink:actively_involved_in
biolink:affects
biolink:affects_abundance_of
biolink:affects_activity_of
biolink:affects_degradation_of
biolink:affects_expression_of
biolink:affects_folding_of
biolink:affects_localization_of
biolink:affects_metabolic_processing_of
biolink:affects_molecular_modification_of
biolink:affects_mutation_rate_of
biolink:affects_response_to
biolink:affects_risk_for
biolink:affects_secretion_of
biolink:affects_splicing_of
biolink:affects_stability_of
biolink:affects_synthesis_of
biolink:affects_transport_of
biolink:affects_uptake_of
biolink:aggregate_statistic
biolink:anatomical_entity_to_anatomical_entity_association_object
biolink:anatomical_entity_to_anatomical_entity_association_subject
biolink:anatomical_entity_to_anatomical_entity_ontogenic_association_object
biolink:anatomical_entity_to_anatomical_entity_ontogenic_association_relation
biolink:anatomical_entity_to_anatomical_entity_ontogenic_association_subject
biolink:anatomical_entity_to_anatomical_entity_part_of_association_object
biolink:anatomical_entity_to_anatomical_entity_part_of_association_relation
biolink:anatomical_entity_to_anatomical_entity_part_of_association_subject
biolink:association_id
biolink:association_slot
biolink:association_type
biolink:biomarker_for
biolink:capable_of
biolink:case_to_thing_association_subject
biolink:category
biolink:caused_by
biolink:causes
biolink:cell_line_as_a_model_of_disease_association_subject
biolink:cell_line_to_disease_or_phenotypic_feature_association_subject
biolink:cell_line_to_thing_association_subject
biolink:change_is_catalyzed_by
biolink:chemical_to_chemical_association_object
biolink:chemical_to_chemical_derivation_association_change_is_catalyzed_by
biolink:chemical_to_chemical_derivation_association_object
biolink:chemical_to_chemical_derivation_association_relation
biolink:chemical_to_chemical_derivation_association_subject
biolink:chemical_to_disease_or_phenotypic_feature_association_object
biolink:chemical_to_gene_association_object
biolink:chemical_to_pathway_association_object
biolink:chemical_to_thing_association_subject
biolink:clinical_modifier_qualifier
biolink:coexists_with
biolink:colocalizes_with
biolink:contributes_to
biolink:correlated_with
biolink:creation_date
biolink:decreases_abundance_of
biolink:decreases_activity_of
biolink:decreases_degradation_of
biolink:decreases_expression_of
biolink:decreases_folding_of
biolink:decreases_localization_of
biolink:decreases_metabolic_processing_of
biolink:decreases_molecular_modification_of
biolink:decreases_mutation_rate_of
biolink:decreases_response_to
biolink:decreases_secretion_of
biolink:decreases_splicing_of
biolink:decreases_stability_of
biolink:decreases_synthesis_of
biolink:decreases_transport_of
biolink:decreases_uptake_of
biolink:derives_from
biolink:derives_into
biolink:description
biolink:disease_or_phenotypic_feature_association_to_location_association_object
biolink:disease_or_phenotypic_feature_association_to_thing_association_subject
biolink:disease_to_exposure_association_object
biolink:disease_to_exposure_association_subject
biolink:disease_to_thing_association_subject
biolink:disrupts
biolink:distribution
biolink:downloadURL
biolink:drug_exposure_has_drug
biolink:edge_label
biolink:enabled_by
biolink:end_interbase_coordinate
biolink:entity_to_disease_association_object
biolink:entity_to_phenotypic_feature_association_description
biolink:entity_to_phenotypic_feature_association_object
biolink:exon_to_transcript_relationship_object
biolink:exon_to_transcript_relationship_subject
biolink:exposure_event_to_phenotypic_feature_association_subject
biolink:expressed_in
biolink:expresses
biolink:filler
biolink:frequency_qualifier
biolink:full_name
biolink:functional_association_object
biolink:functional_association_subject
biolink:gene_as_a_model_of_disease_association_subject
biolink:gene_associated_with_condition
biolink:gene_has_variant_that_contributes_to_disease_association_subject
biolink:gene_regulatory_relationship_object
biolink:gene_regulatory_relationship_relation
biolink:gene_regulatory_relationship_subject
biolink:gene_to_disease_association_subject
biolink:gene_to_expression_site_association_object
biolink:gene_to_expression_site_association_quantifier_qualifier
biolink:gene_to_expression_site_association_relation
biolink:gene_to_expression_site_association_stage_qualifier
biolink:gene_to_expression_site_association_subject
biolink:gene_to_gene_association_object
biolink:gene_to_gene_association_subject
biolink:gene_to_gene_homology_association_relation
biolink:gene_to_gene_product_relationship_object
biolink:gene_to_gene_product_relationship_relation
biolink:gene_to_gene_product_relationship_subject
biolink:gene_to_go_term_association_object
biolink:gene_to_go_term_association_subject
biolink:gene_to_phenotypic_feature_association_subject
biolink:gene_to_thing_association_subject
biolink:genetically_interacts_with
biolink:genome_build
biolink:genomic_sequence_localization_object
biolink:genomic_sequence_localization_subject
biolink:genotype_as_a_model_of_disease_association_subject
biolink:genotype_to_disease_association_object
biolink:genotype_to_disease_association_relation
biolink:genotype_to_disease_association_subject
biolink:genotype_to_gene_association_object
biolink:genotype_to_gene_association_relation
biolink:genotype_to_gene_association_subject
biolink:genotype_to_genotype_part_association_object
biolink:genotype_to_genotype_part_association_relation
biolink:genotype_to_genotype_part_association_subject
biolink:genotype_to_phenotypic_feature_association_relation
biolink:genotype_to_phenotypic_feature_association_subject
biolink:genotype_to_thing_association_subject
biolink:genotype_to_variant_association_object
biolink:genotype_to_variant_association_relation
biolink:genotype_to_variant_association_subject
biolink:has_attribute
biolink:has_attribute_type
biolink:has_biological_sequence
biolink:has_biomarker
biolink:has_chemical_formula
biolink:has_confidence_level
biolink:has_count
biolink:has_drug
biolink:has_evidence
biolink:has_gene
biolink:has_gene_product
biolink:has_input
biolink:has_molecular_consequence
biolink:has_numeric_value
biolink:has_output
biolink:has_part
biolink:has_participant
biolink:has_percentage
biolink:has_phenotype
biolink:has_qualitative_value
biolink:has_quantitative_value
biolink:has_quotient
biolink:has_receptor
biolink:has_route
biolink:has_stressor
biolink:has_total
biolink:has_unit
biolink:has_zygosity
biolink:homologous_to
biolink:id
biolink:in_cell_population_with
biolink:in_complex_with
biolink:in_pathway_with
biolink:in_taxon
biolink:increases_abundance_of
biolink:increases_activity_of
biolink:increases_degradation_of
biolink:increases_expression_of
biolink:increases_folding_of
biolink:increases_localization_of
biolink:increases_metabolic_processing_of
biolink:increases_molecular_modification_of
biolink:increases_mutation_rate_of
biolink:increases_response_to
biolink:increases_secretion_of
biolink:increases_splicing_of
biolink:increases_stability_of
biolink:increases_synthesis_of
biolink:increases_transport_of
biolink:increases_uptake_of
biolink:interacting_molecules_category
biolink:interacts_with
biolink:interbase_coordinate
biolink:iri
biolink:latitude
biolink:located_in
biolink:location_of
biolink:longitude
biolink:macromolecular_machine_name
biolink:macromolecular_machine_to_biological_process_association_object
biolink:macromolecular_machine_to_cellular_component_association_object
biolink:macromolecular_machine_to_molecular_activity_association_object
biolink:manifestation_of
biolink:material_sample_derivation_association_object
biolink:material_sample_derivation_association_relation
biolink:material_sample_derivation_association_subject
biolink:material_sample_to_thing_association_subject
biolink:model_of
biolink:model_to_disease_mixin_relation
biolink:model_to_disease_mixin_subject
biolink:molecular_activity_enabled_by
biolink:molecular_activity_has_input
biolink:molecular_activity_has_output
biolink:molecularly_interacts_with
biolink:name
biolink:negated
biolink:negatively_regulates
biolink:negatively_regulates_entity_to_entity
biolink:negatively_regulates_process_to_process
biolink:node_property
biolink:object
biolink:occurs_in
biolink:onset_qualifier
biolink:organismal_entity_as_a_model_of_disease_association_subject
biolink:orthologous_to
biolink:overlaps
biolink:pairwise_gene_to_gene_interaction_relation
biolink:pairwise_interaction_association_id
biolink:pairwise_interaction_association_object
biolink:pairwise_interaction_association_relation
biolink:pairwise_interaction_association_subject
biolink:paralogous_to
biolink:part_of
biolink:participates_in
biolink:phase
biolink:physically_interacts_with
biolink:population_to_population_association_object
biolink:population_to_population_association_relation
biolink:population_to_population_association_subject
biolink:positively_regulates
biolink:positively_regulates_entity_to_entity
biolink:positively_regulates_process_to_process
biolink:precedes
biolink:predisposes
biolink:prevents
biolink:produces
biolink:provided_by
biolink:publications
biolink:qualifiers
biolink:quantifier_qualifier
biolink:regulates
biolink:regulates_entity_to_entity
biolink:regulates_process_to_process
biolink:related_to
biolink:relation
biolink:retrievedOn
biolink:same_as
biolink:sequence_feature_relationship_object
biolink:sequence_feature_relationship_subject
biolink:sequence_variant_has_biological_sequence
biolink:sequence_variant_has_gene
biolink:sequence_variant_id
biolink:sequence_variant_modulates_treatment_association_object
biolink:sequence_variant_modulates_treatment_association_subject
biolink:sequence_variant_qualifier
biolink:severity_qualifier
biolink:sex_qualifier
biolink:source_data_file
biolink:source_version
biolink:source_web_page
biolink:stage_qualifier
biolink:start_interbase_coordinate
biolink:subclass_of
biolink:subject
biolink:synonym
biolink:systematic_synonym
biolink:thing_to_disease_or_phenotypic_feature_association_object
biolink:timepoint
biolink:title
biolink:transcript_to_gene_relationship_object
biolink:transcript_to_gene_relationship_subject
biolink:treated_by
biolink:treatment_has_part
biolink:treats
biolink:type
biolink:update_date
biolink:variant_as_a_model_of_disease_association_subject
biolink:variant_to_disease_association_object
biolink:variant_to_disease_association_relation
biolink:variant_to_disease_association_subject
biolink:variant_to_phenotypic_feature_association_subject
biolink:variant_to_population_association_has_count
biolink:variant_to_population_association_has_quotient
biolink:variant_to_population_association_has_total
biolink:variant_to_population_association_object
biolink:variant_to_population_association_subject
biolink:variant_to_thing_association_subject
biolink:versionOf
biolink:xenologous_to
Types
biolink:BiologicalSequence
https://w3id.org/biolink/vocab/biolinkml:types/Boolean
biolink:CategoryType
biolink:ChemicalFormulaValue
https://w3id.org/biolink/vocab/biolinkml:types/Date
https://w3id.org/biolink/vocab/biolinkml:types/Datetime
https://w3id.org/biolink/vocab/biolinkml:types/Double
biolink:EdgeLabelType
https://w3id.org/biolink/vocab/biolinkml:types/Float
biolink:Frequency
biolink:IdentifierType
https://w3id.org/biolink/vocab/biolinkml:types/Integer
biolink:IriType
biolink:LabelType
biolink:NarrativeText
https://w3id.org/biolink/vocab/biolinkml:types/Ncname
https://w3id.org/biolink/vocab/biolinkml:types/Nodeidentifier
https://w3id.org/biolink/vocab/biolinkml:types/Objectidentifier
biolink:PercentageFrequencyValue
biolink:Quotient
https://w3id.org/biolink/vocab/biolinkml:types/String
biolink:SymbolType
https://w3id.org/biolink/vocab/biolinkml:types/Time
biolink:TimeType
biolink:Unit
https://w3id.org/biolink/vocab/biolinkml:types/Uri
https://w3id.org/biolink/vocab/biolinkml:types/Uriorcurie
biolink:BiologicalSequence
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Boolean
biolink:ChemicalFormulaValue
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Date
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Datetime
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Double
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Float
biolink:Frequency
biolink:IdentifierType
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Integer
biolink:IriType
biolink:LabelType
biolink:NarrativeText
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Ncname
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Nodeidentifier
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Objectidentifier
biolink:PercentageFrequencyValue
biolink:Quotient
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/String
biolink:SymbolType
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Time
biolink:TimeType
biolink:Unit
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Uri
https://w3id.org/biolink/vocab/https://w3id.org/biolink/biolinkml/types/Uriorcurie
Mapping to a graph store
Mapping Biolink Model to a Neo4j property graph
Mapping Biolink Model to a RDF and RDF*
Search
Biolink Model on GitHub
Browse Biolink Model
Mixins
biolink:RelationshipQuantifier
Type: RelationshipQuantifier
URI:
biolink:RelationshipQuantifier
Children
FrequencyQuantifier
SensitivityQuantifier
SpecificityQuantifier
Referenced by class
Attributes