Class: PhysicalEssence
Semantic mixin concept. Pertains to entities that have physical properties such as mass, volume, or charge.
Parents
- is_a: PhysicalEssenceOrOccurrent - Either a physical or processual entity.
Mixin for
- AccessibleDnaRegion (mixin) - A region (or regions) of a chromatinized genome that has been measured to be more accessible to an enzyme such as DNase-I or Tn5 Transpose
- AnatomicalEntity (mixin) - A subcellular location, cell type or gross anatomical part
- ChemicalEntity (mixin) - A chemical entity is a physical entity that pertains to chemistry or biochemistry.
- Gene (mixin) - A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene locus may include regulatory regions, transcribed regions and/or other functional sequence regions.
- Genome (mixin) - A genome is the sum of genetic material within a cell or virion.
- GenomicBackgroundExposure (mixin) - A genomic background exposure is where an individual’s specific genomic background of genes, sequence variants or other pre-existing genomic conditions constitute a kind of ‘exposure’ to the organism, leading to or influencing an outcome.
- Genotype (mixin) - An information content entity that describes a genome by specifying the total variation in genomic sequence and/or gene expression, relative to some established background
- Haplotype (mixin) - A set of zero or more Alleles on a single instance of a Sequence[VMC]
- NucleicAcidEntity (mixin) - A nucleic acid entity is a molecular entity characterized by availability in gene databases of nucleotide-based sequence representations of its precise sequence; for convenience of representation, partial sequences of various kinds are included.
- PhysicalEntity (mixin) - An entity that has material reality (a.k.a. physical essence).
- ReagentTargetedGene (mixin) - A gene altered in its expression level in the context of some experiment as a result of being targeted by gene-knockdown reagent(s) such as a morpholino or RNAi.
- RegulatoryRegion (mixin) - A region (or regions) of the genome that contains known or putative regulatory elements that act in cis- or trans- to affect the transcription of gene
- SequenceVariant (mixin) - A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration.
- TranscriptionFactorBindingSite (mixin) - A region (or regions) of the genome that contains a region of DNA known or predicted to bind a protein that modulates gene transcription