Link

Type: GenomicEntity

an entity that can either be directly located on a genome (gene, transcript, exon, regulatory region) or is encoded in a genome (protein)

URI: biolink:GenomicEntity

SO:0000110

GENO:0000897

UMLSSC:T028

UMLSST:gngm

UMLSSC:T086

UMLSST:nusq


![img](http://yuml.me/diagram/nofunky;dir:TB/class/[Transcript],[SequenceVariant],[SequenceFeatureRelationship],[ReagentTargetedGene],[OrganismTaxon],[MolecularEntity],[MacromolecularMachine],[Haplotype],[Genotype],[GenomicSequenceLocalization],[GenomicSequenceLocalization]-%20object%201..1%3E[GenomicEntity has_biological_sequence:biological_sequence%20%3F;id(i):string;name(i):label_type;category(i):category_type%20%2B],[GenomicSequenceLocalization]-%20subject%201..1%3E[GenomicEntity],[SequenceFeatureRelationship]-%20object%201..1%3E[GenomicEntity],[SequenceFeatureRelationship]-%20subject%201..1%3E[GenomicEntity],[GenomicEntity]%5E-[Transcript],[GenomicEntity]%5E-[SequenceVariant],[GenomicEntity]%5E-[ReagentTargetedGene],[GenomicEntity]%5E-[MacromolecularMachine],[GenomicEntity]%5E-[Haplotype],[GenomicEntity]%5E-[Genotype],[GenomicEntity]%5E-[Genome],[GenomicEntity]%5E-[Exon],[GenomicEntity]%5E-[CodingSequence],[MolecularEntity]%5E-[GenomicEntity],[Genome],[Exon],[CodingSequence])

Parents

  • is_a: MolecularEntity - A gene, gene product, small molecule or macromolecule (including protein complex)

Children

  • CodingSequence
  • Exon - A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing
  • Genome - A genome is the sum of genetic material within a cell or virion.
  • Genotype - An information content entity that describes a genome by specifying the total variation in genomic sequence and/or gene expression, relative to some extablished background
  • Haplotype - A set of zero or more Alleles on a single instance of a Sequence[VMC]
  • MacromolecularMachine - A union of gene, gene product, and macromolecular complex. These are the basic units of function in a cell. They either carry out individual biological activities, or they encode molecules which do this.
  • ReagentTargetedGene - A gene altered in its expression level in the context of some experiment as a result of being targeted by gene-knockdown reagent(s) such as a morpholino or RNAi
  • SequenceVariant - An allele that varies in its sequence from what is considered the reference allele at that locus.
  • Transcript - An RNA synthesized on a DNA or RNA template by an RNA polymerase

Referenced by class

Attributes

Own

Inherited from named thing:

  • id REQ
    • Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
    • range: String
    • in subsets: (translator_minimal)
  • name REQ
    • Description: A human-readable name for a thing
    • range: LabelType
    • in subsets: (translator_minimal)
  • category 1..*
    • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag
    • range: CategoryType
    • in subsets: (translator_minimal)

Inherited from thing with taxon:

  • in taxon 0..*
    • Description: connects a thing to a class representing a taxon
    • range: OrganismTaxon
    • in subsets: (translator_minimal)

Other properties

     
Aliases:   sequence feature
Mappings:   SO:0000110
    GENO:0000897
    UMLSSC:T028
    UMLSST:gngm
    UMLSSC:T086
    UMLSST:nusq