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Type: GeneToGeneAssociation

abstract parent class for different kinds of gene-gene or gene product to gene product relationships. Includes homology and interaction.

URI: biolink:GeneToGeneAssociation


![img](http://yuml.me/diagram/nofunky;dir:TB/class/[Publication],[Provider],[PairwiseGeneToGeneInteraction],[OntologyClass],[GeneToGeneHomologyAssociation],[GeneOrGeneProduct]%3Cobject%201..1-%20[GeneToGeneAssociation relation(i):uriorcurie;id(i):string;negated(i):boolean%20%3F],[GeneOrGeneProduct]%3Csubject%201..1-%20[GeneToGeneAssociation],[GeneToGeneAssociation]%5E-[PairwiseGeneToGeneInteraction],[GeneToGeneAssociation]%5E-[GeneToGeneHomologyAssociation],[Association]%5E-[GeneToGeneAssociation],[GeneOrGeneProduct],[Association])

Parents

  • is_a: Association - A typed association between two entities, supported by evidence

Children

  • GeneToGeneHomologyAssociation - A homology association between two genes. May be orthology (in which case the species of subject and object should differ) or paralogy (in which case the species may be the same)
  • PairwiseGeneToGeneInteraction - An interaction between two genes or two gene products. May be physical (e.g. protein binding) or genetic (between genes). May be symmetric (e.g. protein interaction) or directed (e.g. phosphorylation)

Referenced by class

Attributes

Own

Inherited from association:

  • subject REQ
    • Description: connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
    • range: NamedThing
  • relation REQ
    • Description: The relation which describes an association between a subject and an object in a more granular manner. Usually this is a term from Relation Ontology, but it can be any edge CURIE.
    • range: Uriorcurie
  • object REQ
    • Description: connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
    • range: NamedThing
  • association➞id REQ
    • Description: A unique identifier for an association
    • range: String
    • in subsets: (translator_minimal)
  • negated OPT
    • Description: if set to true, then the association is negated i.e. is not true
    • range: Boolean
  • association type OPT
    • Description: connects an association to the type of association (e.g. gene to phenotype)
    • range: OntologyClass
  • qualifiers 0..*
    • Description: connects an association to qualifiers that modify or qualify the meaning of that association
    • range: OntologyClass
  • publications 0..*
    • Description: connects an association to publications supporting the association
    • range: Publication
  • provided by 0..*
    • Description: connects an association to the agent (person, organization or group) that provided it
    • range: Provider

Domain for slot:

Other properties

     
Aliases:   molecular or genetic interaction