Class: GeneExpressionMixin

Observed gene expression intensity, context (site, stage) and associated phenotypic status within which the expression occurs.

URI: biolink:GeneExpressionMixin

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Mixin for

• GeneToGeneCoexpressionAssociation (mixin) - Indicates that two genes are co-expressed, generally under the same conditions.
• VariantToGeneExpressionAssociation (mixin) - An association between a variant and expression of a gene (i.e. e-QTL)

Referenced by class

Attributes

Own

• expression site _0..1
  • Description: location in which gene or protein expression takes place. May be cell, tissue, or organ.
  • Range: AnatomicalEntity
  • Example: UBERON:0002037 cerebellum
• quantifier qualifier _0..1
  • Description: A measurable quantity for the object of the association
  • Range: OntologyClass
• phenotypic state _0..1
  • Description: in experiments (e.g. gene expression) assaying diseased or unhealthy tissue, the phenotypic state can be put here, e.g. MONDO ID. For healthy tissues, use XXX.
  • Range: DiseaseOrPhenotypicFeature

Inherited from gene to expression site association:

• stage qualifier _0..1
  • Description: stage during which gene or protein expression of takes place.
  • Range: LifeStage
  • Example: UBERON:0000069 larval stage
  • in subsets: (translator_minimal)
• quantifier qualifier _0..1
  • Description: A measurable quantity for the object of the association
  • Range: OntologyClass
• subject _1..1
  • Description: connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
  • Range: NamedThing
• object _1..1
  • Description: connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
  • Range: NamedThing
• predicate _1..1
  • Description: A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes.
  • Range: PredicateType

Domain for slot:

• quantifier qualifier _0..1
  • Description: A measurable quantity for the object of the association
  • Range: OntologyClass