biolink-model

Class: ChemicalMixture

A chemical mixture is a chemical entity composed of two or more molecular entities.

URI: biolink:ChemicalMixture

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Identifier prefixes

• PUBCHEM.COMPOUND
• CHEMBL.COMPOUND
• UNII
• CHEBI
• DRUGBANK
• MESH
• CAS
• DrugCentral
• GTOPDB
• HMDB
• KEGG.COMPOUND
• ChemBank
• PUBCHEM.SUBSTANCE
• SIDER.DRUG
• INCHI
• INCHIKEY
• KEGG.GLYCAN
• KEGG.DRUG
• KEGG
• KEGG.ENVIRON
• UMLS

Parents

• is_a: ChemicalEntity - A chemical entity is a physical entity that pertains to chemistry or biochemistry.

Children

• ComplexMolecularMixture - A complex molecular mixture is a chemical mixture composed of two or more molecular entities with unknown concentration and stoichiometry.
• Food - A substance consumed by a living organism as a source of nutrition
• MolecularMixture - A molecular mixture is a chemical mixture composed of two or more molecular entities with known concentration and stoichiometry.
• ProcessedMaterial - A chemical entity (often a mixture) processed for consumption for nutritional, medical or technical use. Is a material entity that is created or changed during material processing.

Referenced by class

• NamedThing is supplement _0..1 ChemicalMixture

Attributes

Own

• drug regulatory status world wide _0..1
  • Description: An agglomeration of drug regulatory status worldwide. Not specific to FDA.
  • Range: String
• highest FDA approval status _0..1
  • Description: Should be the highest level of FDA approval this chemical entity or device has, regardless of which disease, condition or phenotype it is currently being reviewed to treat. For specific levels of FDA approval for a specific condition, disease, phenotype, etc., see the association slot, ‘FDA approval status.’
  • Range: String
• is supplement _0..1
  • Range: ChemicalMixture
• routes of delivery _0..*
  • Description: the method or process of administering a pharmaceutical compound to achieve a therapeutic effect in humans or animals.
  • Range: DrugDeliveryEnum

Inherited from chemical entity:

• trade name _0..1
  • Range: ChemicalEntity
• available from _0..*
  • Range: DrugAvailabilityEnum
• max tolerated dose _0..1
  • Description: The highest dose of a drug or treatment that does not cause unacceptable side effects. The maximum tolerated dose is determined in clinical trials by testing increasing doses on different groups of people until the highest dose with acceptable side effects is found. Also called MTD.
  • Range: String
• is toxic _0..1
  • Range: Boolean
• has chemical role _0..*
  • Description: A role is particular behaviour which a chemical entity may exhibit.
  • Range: ChemicalRole

Inherited from entity:

• id _1..1
  • Description: A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI
  • Range: String
  • in subsets: (translator_minimal)
• iri _0..1
  • Description: An IRI for an entity. This is determined by the id using expansion rules.
  • Range: IriType
  • in subsets: (translator_minimal,samples)
• category _0..*
  • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
• In a neo4j database this MAY correspond to the neo4j label tag.
• In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}
  • Range: CategoryType
  • in subsets: (translator_minimal)
• type _0..*
  • Range: String
• description _0..1
  • Description: a human-readable description of an entity
  • Range: NarrativeText
  • in subsets: (translator_minimal)
• has attribute _0..*
  • Description: connects any entity to an attribute
  • Range: Attribute
  • in subsets: (samples)

Inherited from gene product mixin:

• synonym _0..*
  • Description: Alternate human-readable names for a thing
  • Range: LabelType
  • in subsets: (translator_minimal)
• xref _0..*
  • Description: A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references.
  • Range: Uriorcurie
  • in subsets: (translator_minimal)

Inherited from macromolecular machine mixin:

• name _0..1
  • Description: A human-readable name for an attribute or entity.
  • Range: LabelType
  • in subsets: (translator_minimal,samples)

Inherited from named thing:

• provided by _0..*
  • Description: The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph.
  • Range: String
• full name _0..1
  • Description: a long-form human readable name for a thing
  • Range: LabelType
• category _0..*
  • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
• In a neo4j database this MAY correspond to the neo4j label tag.
• In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}
  • Range: CategoryType
  • in subsets: (translator_minimal)

Other properties

In Subsets:		translator_minimal
Close Mappings:		dcid:ChemicalCompound
Narrow Mappings:		NCIT:C20401
		SNOMEDCT:49616005

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