Link

Class: BiologicalEntity

URI: biolink:BiologicalEntity

WIKIDATA:Q28845870

UMLSSC:T050

UMLSST:emod


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Parents

  • is_a: NamedThing - a databased entity or concept/class

Children

  • BiologicalProcessOrActivity - Either an individual molecular activity, or a collection of causally connected molecular activities
  • DiseaseOrPhenotypicFeature - Either one of a disease or an individual phenotypic feature. Some knowledge resources such as Monarch treat these as distinct, others such as MESH conflate.
  • ExposureEvent - A feature of the environment of an organism that influences one or more phenotypic features of that organism, potentially mediated by genes
  • MolecularEntity - A gene, gene product, small molecule or macromolecule (including protein complex)
  • OrganismalEntity - A named entity that is either a part of an organism, a whole organism, population or clade of organisms, excluding molecular entities

Referenced by class

Attributes

Inherited from gene product:

  • id REQ
    • Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
    • range: String
    • in subsets: (translator_minimal)
  • name REQ
    • Description: A human-readable name for a thing
    • range: LabelType
    • in subsets: (translator_minimal)

Inherited from named thing:

  • category 1..*
    • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
  • In a neo4j database this MAY correspond to the neo4j label tag.
  • In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values bl:Protein, bl:GeneProduct, bl:MolecularEntity, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {bl:GenomicEntity, bl:MolecularEntity, bl:NamedThing}

Other properties

     
Mappings:   WIKIDATA:Q28845870
    UMLSSC:T050
    UMLSST:emod