Class: AnatomicalEntity
A subcellular location, cell type or gross anatomical part
Identifier prefixes
- UBERON
- GO
- CL
- UMLS
- MESH
- NCIT
Parents
- is_a: OrganismalEntity - A named entity that is either a part of an organism, a whole organism, population or clade of organisms, excluding molecular entities
Uses Mixins
- mixin: ThingWithTaxon - A mixin that can be used on any entity that can be taxonomically classified. This includes individual organisms; genes, their products and other molecular entities; body parts; biological processes
- mixin: PhysicalEssence - Semantic mixin concept. Pertains to entities that have physical properties such as mass, volume, or charge.
Children
- Cell
- CellularComponent - A location in or around a cell
- GrossAnatomicalStructure
- PathologicalAnatomicalStructure - An anatomical structure with the potential of have an abnormal or deleterious effect at the subcellular, cellular, multicellular, or organismal level.
Referenced by class
- AnatomicalEntityToAnatomicalEntityAssociation anatomical entity to anatomical entity association➞object REQ AnatomicalEntity
- AnatomicalEntityToAnatomicalEntityAssociation anatomical entity to anatomical entity association➞subject REQ AnatomicalEntity
- AnatomicalEntityToAnatomicalEntityOntogenicAssociation anatomical entity to anatomical entity ontogenic association➞object REQ AnatomicalEntity
- AnatomicalEntityToAnatomicalEntityOntogenicAssociation anatomical entity to anatomical entity ontogenic association➞subject REQ AnatomicalEntity
- AnatomicalEntityToAnatomicalEntityPartOfAssociation anatomical entity to anatomical entity part of association➞object REQ AnatomicalEntity
- AnatomicalEntityToAnatomicalEntityPartOfAssociation anatomical entity to anatomical entity part of association➞subject REQ AnatomicalEntity
- DiseaseOrPhenotypicFeatureAssociationToLocationAssociation disease or phenotypic feature association to location association➞object REQ AnatomicalEntity
- DiseaseOrPhenotypicFeatureToLocationAssociation disease or phenotypic feature to location association➞object REQ AnatomicalEntity
- GeneOrGeneProduct expressed in 0..* AnatomicalEntity
- Association expression site OPT AnatomicalEntity
- GeneToExpressionSiteAssociation gene to expression site association➞object REQ AnatomicalEntity
Attributes
Inherited from entity:
- id REQ
- Description: A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI
- range: String
- in subsets: (translator_minimal)
- iri OPT
- Description: An IRI for an entity. This is determined by the id using expansion rules.
- range: IriType
- in subsets: (translator_minimal,samples)
- category 1..*
- Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
- In a neo4j database this MAY correspond to the neo4j label tag.
- In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values
bl:Protein
,bl:GeneProduct
,bl:MolecularEntity
, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence featuref
may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {bl:GenomicEntity, bl:MolecularEntity, bl:NamedThing}- range: CategoryType
- in subsets: (translator_minimal)
- type OPT
- range: String
- description OPT
- Description: a human-readable description of an entity
- range: NarrativeText
- in subsets: (translator_minimal)
- source OPT
- Description: a lightweight analog to the association class ‘has provider’ slot, which is the string name, or the authoritative (i.e. database) namespace, designating the origin of the entity to which the slot belongs.
- range: LabelType
- in subsets: (translator_minimal)
- provided by 0..*
- Description: connects an association to the agent (person, organization or group) that provided it
- range: Agent
- has attribute 0..*
- Description: connects any entity to an attribute
- range: Attribute
- in subsets: (samples)
Inherited from macromolecular machine mixin:
- macromolecular machine mixin➞name OPT
- Description: genes are typically designated by a short symbol and a full name. We map the symbol to the default display name and use an additional slot for full name
- range: SymbolType
Inherited from named thing:
- named thing➞category 1..*
- range: NamedThing
Inherited from organismal entity:
- organismal entity➞has attribute 0..*
- Description: may often be an organism attribute
- range: Attribute
Inherited from thing with taxon:
- in taxon 0..*
- Description: connects an entity to its taxonomic classification. Only certain kinds of entities can be taxonomically classified; see ‘thing with taxon’
- range: OrganismTaxon
- in subsets: (translator_minimal)
Other properties
In Subsets: | model_organism_database | |
Exact Mappings: | UBERON:0001062 | |
WIKIDATA:Q4936952 | ||
UMLSSG:ANAT | ||
Narrow Mappings: | UMLSSC:T022 | |
UMLSST:bdsy | ||
UMLSSC:T029 | ||
UMLSST:blor | ||
UMLSSC:T030 | ||
UMLSST:bsoj | ||
UMLSSC:T031 | ||
UMLSST:bdsu |