Class: AnatomicalEntity

A subcellular location, cell type or gross anatomical part

URI: biolink:AnatomicalEntity

SIO:010046

UBERON:0001062

WIKIDATA:Q4936952

UMLSSG:ANAT

UMLSSC:T022

UMLSST:bdsy

UMLSSC:T029

UMLSST:blor

UMLSSC:T030

UMLSST:bsoj

UMLSSC:T031

UMLSST:bdsu

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Identifier prefixes

• UBERON
• GO
• CL
• UMLS
• MESH
• NCIT

Parents

• is_a: OrganismalEntity - A named entity that is either a part of an organism, a whole organism, population or clade of organisms, excluding molecular entities

Uses Mixins

• mixin: ThingWithTaxon - A mixin that can be used on any entity with a taxon
• mixin: PhysicalEntity - An entity that has physical properties such as mass, volume, or charge

Children

• Cell
• CellularComponent - A location in or around a cell
• GrossAnatomicalStructure

Referenced by class

• AnatomicalEntityToAnatomicalEntityAssociation anatomical entity to anatomical entity association➞object _REQ AnatomicalEntity
• AnatomicalEntityToAnatomicalEntityAssociation anatomical entity to anatomical entity association➞subject _REQ AnatomicalEntity
• AnatomicalEntityToAnatomicalEntityOntogenicAssociation anatomical entity to anatomical entity ontogenic association➞object _REQ AnatomicalEntity
• AnatomicalEntityToAnatomicalEntityOntogenicAssociation anatomical entity to anatomical entity ontogenic association➞subject _REQ AnatomicalEntity
• AnatomicalEntityToAnatomicalEntityPartOfAssociation anatomical entity to anatomical entity part of association➞object _REQ AnatomicalEntity
• AnatomicalEntityToAnatomicalEntityPartOfAssociation anatomical entity to anatomical entity part of association➞subject _REQ AnatomicalEntity
• DiseaseOrPhenotypicFeatureAssociationToLocationAssociation disease or phenotypic feature association to location association➞object _REQ AnatomicalEntity
• GeneOrGeneProduct expressed in _0..* AnatomicalEntity
• GeneToExpressionSiteAssociation gene to expression site association➞object _REQ AnatomicalEntity

Attributes

Inherited from gene product:

• id _REQ
  • Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
  • range: String
  • in subsets: (translator_minimal)
• name _REQ
  • Description: A human-readable name for a thing
  • range: LabelType
  • in subsets: (translator_minimal)

Inherited from named thing:

• category _1..*
  • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
• In a neo4j database this MAY correspond to the neo4j label tag.
• In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values bl:Protein, bl:GeneProduct, bl:MolecularEntity, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {bl:GenomicEntity, bl:MolecularEntity, bl:NamedThing}
  • range: CategoryType
  • in subsets: (translator_minimal)

Inherited from thing with taxon:

• in taxon _0..*
  • Description: connects a thing to a class representing a taxon
  • range: OrganismTaxon
  • in subsets: (translator_minimal)

Other properties