Class: AnatomicalEntity
A subcellular location, cell type or gross anatomical part
Identifier prefixes
- UBERON
- GO
- CL
- UMLS
- MESH
- NCIT
- EMAPA
- ZFA
- FBbt
- WBbt
Parents
- is_a: OrganismalEntity - A named entity that is either a part of an organism, a whole organism, population or clade of organisms, excluding chemical entities
Uses Mixins
- mixin: PhysicalEssence - Semantic mixin concept. Pertains to entities that have physical properties such as mass, volume, or charge.
Children
- Cell
- CellularComponent - A location in or around a cell
- GrossAnatomicalStructure
- PathologicalAnatomicalStructure - An anatomical structure with the potential of have an abnormal or deleterious effect at the subcellular, cellular, multicellular, or organismal level.
Referenced by class
- AnatomicalEntityToAnatomicalEntityAssociation object 1..1 AnatomicalEntity
- AnatomicalEntityToAnatomicalEntityAssociation subject 1..1 AnatomicalEntity
- AnatomicalEntityToAnatomicalEntityOntogenicAssociation object 1..1 AnatomicalEntity
- AnatomicalEntityToAnatomicalEntityOntogenicAssociation subject 1..1 AnatomicalEntity
- AnatomicalEntityToAnatomicalEntityPartOfAssociation object 1..1 AnatomicalEntity
- AnatomicalEntityToAnatomicalEntityPartOfAssociation subject 1..1 AnatomicalEntity
- ChemicalAffectsGeneAssociation anatomical context qualifier 0..1 AnatomicalEntity
- ChemicalAffectsGeneAssociation object context qualifier 0..1 AnatomicalEntity
- ChemicalAffectsGeneAssociation subject context qualifier 0..1 AnatomicalEntity
- ChemicalGeneInteractionAssociation anatomical context qualifier 0..1 AnatomicalEntity
- ChemicalGeneInteractionAssociation object context qualifier 0..1 AnatomicalEntity
- ChemicalGeneInteractionAssociation subject context qualifier 0..1 AnatomicalEntity
- DiseaseOrPhenotypicFeatureToLocationAssociation object 1..1 AnatomicalEntity
- GeneOrGeneProduct expressed in 0..* AnatomicalEntity
- Association expression site 0..1 AnatomicalEntity
- GeneToExpressionSiteAssociation object 1..1 AnatomicalEntity
Attributes
Inherited from entity:
- id 1..1
- Description: A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI
- Range: String
- in subsets: (translator_minimal)
- iri 0..1
- Description: An IRI for an entity. This is determined by the id using expansion rules.
- Range: IriType
- in subsets: (translator_minimal,samples)
- category 0..*
- Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
- In a neo4j database this MAY correspond to the neo4j label tag.
- In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values
biolink:Protein
,biolink:GeneProduct
,biolink:MolecularEntity
, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence featuref
may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}- Range: CategoryType
- in subsets: (translator_minimal)
- type 0..*
- Range: String
- description 0..1
- Description: a human-readable description of an entity
- Range: NarrativeText
- in subsets: (translator_minimal)
- has attribute 0..*
- Description: connects any entity to an attribute
- Range: Attribute
- in subsets: (samples)
Inherited from gene product mixin:
- xref 0..*
- Description: Alternate CURIEs for a thing
- Range: Uriorcurie
- in subsets: (translator_minimal)
Inherited from macromolecular machine mixin:
- name 0..1
- Description: A human-readable name for an attribute or entity.
- Range: LabelType
- in subsets: (translator_minimal,samples)
Inherited from named thing:
- provided by 0..*
- Description: The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph.
- Range: String
- category 0..*
- Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class.
- In a neo4j database this MAY correspond to the neo4j label tag.
- In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values
biolink:Protein
,biolink:GeneProduct
,biolink:MolecularEntity
, … In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence featuref
may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}- Range: CategoryType
- in subsets: (translator_minimal)
Inherited from organismal entity:
- has attribute 0..*
- Description: connects any entity to an attribute
- Range: Attribute
- in subsets: (samples)
Inherited from thing with taxon:
- in taxon 0..*
- Description: connects an entity to its taxonomic classification. Only certain kinds of entities can be taxonomically classified; see ‘thing with taxon’
- Range: OrganismTaxon
- in subsets: (translator_minimal)
Other properties
In Subsets: | model_organism_database | |
Exact Mappings: | UBERON:0001062 | |
WIKIDATA:Q4936952 | ||
UMLSSG:ANAT | ||
STY:T017 | ||
FMA:62955 | ||
CARO:0000000 | ||
SIO:001262 | ||
Narrow Mappings: | ZFA:0100000 | |
FBbt:10000000 | ||
EMAPA:0 | ||
MA:0000001 | ||
XAO:0000000 | ||
WBbt:0000100 | ||
NCIT:C12219 | ||
GO:0110165 | ||
Related Mappings: | SNOMEDCT:123037004 |