Class: anatomical entity

A subcellular location, cell type or gross anatomical part

URI: biolink:AnatomicalEntity

Inheritance

• is_a: OrganismalEntity - A named entity that is either a part of an organism, a whole organism, population or clade of organisms, excluding molecular entities
• mixin: ThingWithTaxon - A mixin that can be used on any entity with a taxon

  Children

• Cell
• CellularComponent - A location in or around a cell
• GrossAnatomicalStructure

  Used by

• AnatomicalEntityToAnatomicalEntityAssociation anatomical entity to anatomical entity association.object _REQ AnatomicalEntity
• AnatomicalEntityToAnatomicalEntityAssociation anatomical entity to anatomical entity association.subject _REQ AnatomicalEntity
• AnatomicalEntityToAnatomicalEntityOntogenicAssociation anatomical entity to anatomical entity ontogenic association.object _REQ AnatomicalEntity
• AnatomicalEntityToAnatomicalEntityOntogenicAssociation anatomical entity to anatomical entity ontogenic association.subject _REQ AnatomicalEntity
• AnatomicalEntityToAnatomicalEntityPartOfAssociation anatomical entity to anatomical entity part of association.object _REQ AnatomicalEntity
• AnatomicalEntityToAnatomicalEntityPartOfAssociation anatomical entity to anatomical entity part of association.subject _REQ AnatomicalEntity
• DiseaseOrPhenotypicFeatureAssociationToLocationAssociation disease or phenotypic feature association to location association.object _REQ AnatomicalEntity
• GeneOrGeneProduct expressed in _0..* AnatomicalEntity
• GeneToExpressionSiteAssociation gene to expression site association.object _REQ AnatomicalEntity

  Fields

• category _0..*
  • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag
  • range: IriType
  • inherited from: NamedThing
  • in subsets: (translator_minimal)
• description _OPT
  • Description: a human-readable description of a thing
  • range: NarrativeText
  • inherited from: NamedThing
  • in subsets: (translator_minimal)
• expresses _0..*
  • Description: holds between an anatomical entity and gene or gene product that is expressed there
  • range: GeneOrGeneProduct
  • in subsets: (translator_minimal)
• full name _OPT
  • Description: a long-form human readable name for a thing
  • range: LabelType
  • inherited from: NamedThing
• has phenotype _0..*
  • Description: holds between a biological entity and a phenotype, where a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature).
  • range: PhenotypicFeature
  • inherited from: BiologicalEntity
  • in subsets: (translator_minimal)
• id _REQ
  • Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
  • range: IdentifierType
  • inherited from: NamedThing
  • in subsets: (translator_minimal)
• in taxon _0..*
  • Description: connects a thing to a class representing a taxon
  • range: OrganismTaxon
  • in subsets: (translator_minimal)
• interacts with _0..*
  • Description: holds between any two entities that directly or indirectly interact with each other
  • range: NamedThing
  • inherited from: NamedThing
  • in subsets: (translator_minimal)
• iri _OPT
  • Description: An IRI for the node. This is determined by the id using expansion rules.
  • range: IriType
  • inherited from: NamedThing
  • in subsets: (translator_minimal)
• name _OPT
  • Description: A human-readable name for a thing
  • range: LabelType
  • inherited from: NamedThing
  • in subsets: (translator_minimal)
• node property _OPT
  • Description: A grouping for any property that holds between a node and a value
  • range: String
  • inherited from: NamedThing
• related to _0..*
  • Description: A relationship that is asserted between two named things
  • range: NamedThing
  • inherited from: NamedThing
• synonym _0..*
  • Description: Alternate human-readable names for a thing
  • range: LabelType
  • inherited from: NamedThing
  • in subsets: (translator_minimal)
• systematic synonym _OPT
  • Description: more commonly used for gene symbols in yeast
  • range: LabelType
  • inherited from: NamedThing