Slot: anatomical_context_qualifier
Description: A statement qualifier representing an anatomical location where an relationship expressed in an association took place (can be a tissue, cell type, or sub-cellular location).
Notes: Anatomical context values can be any term from UBERON. For example, the context qualifier ‘cerebral cortext’ combines with a core concept of ‘neuron’ to express the composed concept ‘neuron in the cerebral cortext’. The species_context_qualifier applies taxonomic context, e.g. species-specific molecular activity. Ontology CURIEs are expected as values here, the examples below are intended to help clarify the content of the CURIEs.
Notes: Anatomical context values can be any term from UBERON. For example, the context qualifier ‘cerebral cortext’ combines with a core concept of ‘neuron’ to express the composed concept ‘neuron in the cerebral cortext’. The species_context_qualifier applies taxonomic context, e.g. species-specific molecular activity. Ontology CURIEs are expected as values here, the examples below are intended to help clarify the content of the CURIEs.
Domain: Association
Range: String
Inheritance
- association_slot
- qualifier
- statement_qualifier
- anatomical_context_qualifier
- statement_qualifier
- qualifier
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ChemicalGeneInteractionAssociation | describes a physical interaction between a chemical entity and a gene or gene product. Any biological or chemical effect resulting from such an interaction are out of scope, and covered by the ChemicalAffectsGeneAssociation type (e.g. impact of a chemical on the abundance, activity, structure, etc, of either participant in the interaction) | yes |
| EntityToPhenotypicFeatureAssociationMixin | None | no |
| PredicateMapping | A deprecated predicate mapping object contains the deprecated predicate and an example of the rewiring that should be done to use a qualified statement in its place. | no |
| ChemicalAffectsGeneAssociation | Describes an effect that a chemical has on a gene or gene product (e.g. an impact of on its abundance, activity,localization, processing, expression, etc.) | yes |
| GeneAffectsChemicalAssociation | Describes an effect that a gene or gene product has on a chemical entity (e.g. an impact of on its abundance, activity, localization, processing, transport, etc.) | yes |
Example values
| Slot Name | Value |
|---|---|
| anatomical_context_qualifier | blood |
| anatomical_context_qualifier | cerebral cortext |
LinkML Source
name: anatomical context qualifier
description: A statement qualifier representing an anatomical location where an relationship
expressed in an association took place (can be a tissue, cell type, or sub-cellular
location).
notes:
- Anatomical context values can be any term from UBERON. For example, the context
qualifier ‘cerebral cortext’ combines with a core concept of ‘neuron’ to express
the composed concept ‘neuron in the cerebral cortext’. The species_context_qualifier
applies taxonomic context, e.g. species-specific molecular activity. Ontology CURIEs
are expected as values here, the examples below are intended to help clarify the
content of the CURIEs.
examples:
- value: blood
- value: cerebral cortext
in_subset:
- translator_minimal
from_schema: https://w3id.org/biolink/biolink-model
is_a: statement qualifier
domain: association
alias: anatomical_context_qualifier
domain_of:
- predicate mapping
- chemical gene interaction association
- chemical affects gene association
- gene affects chemical association
- entity to phenotypic feature association mixin
range: string