Skip to content

Class: MacromolecularMachineToEntityAssociationMixin

Description: an association which has a macromolecular machine mixin as a subject
classDiagram class MacromolecularMachineToEntityAssociationMixin MacromolecularMachineToEntityAssociationMixin <|-- MacromolecularMachineToMolecularActivityAssociation MacromolecularMachineToEntityAssociationMixin <|-- MacromolecularMachineToBiologicalProcessAssociation MacromolecularMachineToEntityAssociationMixin <|-- MacromolecularMachineToCellularComponentAssociation MacromolecularMachineToEntityAssociationMixin : object MacromolecularMachineToEntityAssociationMixin --|> NamedThing : object MacromolecularMachineToEntityAssociationMixin : predicate MacromolecularMachineToEntityAssociationMixin : species_context_qualifier MacromolecularMachineToEntityAssociationMixin --|> OrganismTaxon : species_context_qualifier MacromolecularMachineToEntityAssociationMixin : subject MacromolecularMachineToEntityAssociationMixin --|> NamedThing : subject

Slots

Name Cardinality and Range Inheritance Examples
subject:
connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
1
NamedThing		 direct
predicate:
A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes. 		1
PredicateType		 direct
object:
connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object. 		1
NamedThing		 direct
species_context_qualifier:
A statement qualifier representing a taxonomic category of species in which a relationship expressed in an association took place. 		0..1
OrganismTaxon		 direct zebrafish, human

Mixin Usage

mixed into description
MacromolecularMachineToMolecularActivityAssociation A functional association between a macromolecular machine (gene, gene product or complex) and a molecular activity (as represented in the GO molecular function branch), where the entity carries out the activity, or contributes to its execution.
MacromolecularMachineToBiologicalProcessAssociation A functional association between a macromolecular machine (gene, gene product or complex) and a biological process or pathway (as represented in the GO biological process branch), where the entity carries out some part of the process, regulates it, or acts upstream of it.
MacromolecularMachineToCellularComponentAssociation A functional association between a macromolecular machine (gene, gene product or complex) and a cellular component (as represented in the GO cellular component branch), where the entity carries out its function in the cellular component.

LinkML Source

name: macromolecular machine to entity association mixin
description: an association which has a macromolecular machine mixin as a subject
from_schema: https://w3id.org/biolink/biolink-model
mixin: true
slots:
- subject
- predicate
- object
- species context qualifier
slot_usage:
  subject:
    name: subject
    domain: macromolecular machine mixin