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Class: GeneProductIsoformMixin

Description: This is an abstract class that can be mixed in with different kinds of gene products to indicate that the gene product is intended to represent a specific isoform rather than a canonical or reference or generic product. The designation of canonical or reference may be arbitrary, or it may represent the superclass of all isoforms.
classDiagram class GeneProductIsoformMixin GeneProductMixin <|-- GeneProductIsoformMixin GeneProductIsoformMixin <|-- NucleosomeModification GeneProductIsoformMixin <|-- ProteinIsoform GeneProductIsoformMixin <|-- PosttranslationalModification GeneProductIsoformMixin <|-- RNAProductIsoform GeneProductIsoformMixin : name GeneProductIsoformMixin : synonym GeneProductIsoformMixin : xref

Inheritance

Slots

Name Cardinality and Range Inheritance Examples
synonym:
Alternate human-readable names for a thing
*
LabelType		 GeneProductMixin
xref:
A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references. 		*
Uriorcurie		 GeneProductMixin
name:
genes are typically designated by a short symbol and a full name. We map the symbol to the default display name and use an additional slot for full name 		0..1
SymbolType		 MacromolecularMachineMixin

Mixin Usage

mixed into description
NucleosomeModification A chemical modification of a histone protein within a nucleosome octomer or a substitution of a histone with a variant histone isoform. e.g. Histone 4 Lysine 20 methylation (H4K20me), histone variant H2AZ substituting H2A.
ProteinIsoform Represents a protein that is a specific isoform of the canonical or reference protein. See https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4114032/
PosttranslationalModification A chemical modification of a polypeptide or protein that occurs after translation. e.g. polypeptide cleavage to form separate proteins, methylation or acetylation of histone tail amino acids, protein ubiquitination.
RNAProductIsoform Represents a protein that is a specific isoform of the canonical or reference RNA

LinkML Source

name: gene product isoform mixin
description: This is an abstract class that can be mixed in with different kinds of
  gene products to indicate that the gene product is intended to represent a specific
  isoform rather than a canonical or reference or generic product. The designation
  of canonical or reference may be arbitrary, or it may represent the superclass of
  all isoforms.
from_schema: https://w3id.org/biolink/biolink-model
is_a: gene product mixin
mixin: true