Skip to content

Class: FeatureOrDiseaseQualifiersToEntityMixin

Description: Qualifiers for disease or phenotype to entity associations.
classDiagram class FeatureOrDiseaseQualifiersToEntityMixin FrequencyQualifierMixin <|-- FeatureOrDiseaseQualifiersToEntityMixin FeatureOrDiseaseQualifiersToEntityMixin <|-- PhenotypicFeatureToEntityAssociationMixin FeatureOrDiseaseQualifiersToEntityMixin : frequency_qualifier FeatureOrDiseaseQualifiersToEntityMixin : object FeatureOrDiseaseQualifiersToEntityMixin --|> NamedThing : object FeatureOrDiseaseQualifiersToEntityMixin : object_aspect_qualifier FeatureOrDiseaseQualifiersToEntityMixin : object_direction_qualifier FeatureOrDiseaseQualifiersToEntityMixin --|> DirectionQualifierEnum : object_direction_qualifier FeatureOrDiseaseQualifiersToEntityMixin : predicate FeatureOrDiseaseQualifiersToEntityMixin : qualified_predicate FeatureOrDiseaseQualifiersToEntityMixin : subject FeatureOrDiseaseQualifiersToEntityMixin --|> NamedThing : subject FeatureOrDiseaseQualifiersToEntityMixin : subject_aspect_qualifier FeatureOrDiseaseQualifiersToEntityMixin : subject_direction_qualifier FeatureOrDiseaseQualifiersToEntityMixin --|> DirectionQualifierEnum : subject_direction_qualifier

Inheritance

Slots

Name Cardinality and Range Inheritance Examples
subject_aspect_qualifier:
Composes with the core concept to describe new concepts of a different ontological type. e.g. a process in which the core concept participates, a function/activity/role held by the core concept, or a characteristic/quality that inheres in the core concept. The purpose of the aspect slot is to indicate what aspect is being affected in an 'affects' association. This qualifier specifies a change in the subject of an association (aka: statement).
0..1
String		 direct stability, abundance, expression, exposure
subject_direction_qualifier:
Composes with the core concept (+ aspect if provided) to describe a change in its direction or degree. This qualifier qualifies the subject of an association (aka: statement). 		0..1
DirectionQualifierEnum		 direct
object_aspect_qualifier:
Composes with the core concept to describe new concepts of a different ontological type. e.g. a process in which the core concept participates, a function/activity/role held by the core concept, or a characteristic/quality that inheres in the core concept. The purpose of the aspect slot is to indicate what aspect is being affected in an 'affects' association. This qualifier specifies a change in the object of an association (aka: statement). 		0..1
String		 direct stability, abundance, expression, exposure
object_direction_qualifier:
Composes with the core concept (+ aspect if provided) to describe a change in its direction or degree. This qualifier qualifies the object of an association (aka: statement). 		0..1
DirectionQualifierEnum		 direct
qualified_predicate:
Predicate to be used in an association when subject and object qualifiers are present and the full reading of the statement requires a qualification to the predicate in use in order to refine or increase the specificity of the full statement reading. This qualifier holds a relationship to be used instead of that expressed by the primary predicate, in a ‘full statement’ reading of the association, where qualifier-based semantics are included. This is necessary only in cases where the primary predicate does not work in a full statement reading. 		0..1
String		 direct
frequency_qualifier:
a qualifier used in a phenotypic association to state how frequent the phenotype is observed in the subject 		0..1
FrequencyValue		 FrequencyQualifierMixin
subject:
connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object. 		1
NamedThing		 FrequencyQualifierMixin
predicate:
A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes. 		1
PredicateType		 FrequencyQualifierMixin
object:
connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object. 		1
NamedThing		 FrequencyQualifierMixin

Mixin Usage

mixed into description

LinkML Source

name: feature or disease qualifiers to entity mixin
description: Qualifiers for disease or phenotype to entity associations.
from_schema: https://w3id.org/biolink/biolink-model
is_a: frequency qualifier mixin
mixin: true
slots:
- subject aspect qualifier
- subject direction qualifier
- object aspect qualifier
- object direction qualifier
- qualified predicate