Class: EntityToDiseaseOrPhenotypicFeatureAssociationMixin

classDiagram class EntityToDiseaseOrPhenotypicFeatureAssociationMixin EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- CellLineToDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- ChemicalToDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- MaterialSampleToDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin : anatomical_context_qualifier EntityToDiseaseOrPhenotypicFeatureAssociationMixin : disease_context_qualifier EntityToDiseaseOrPhenotypicFeatureAssociationMixin --|> Disease : disease_context_qualifier EntityToDiseaseOrPhenotypicFeatureAssociationMixin : object EntityToDiseaseOrPhenotypicFeatureAssociationMixin --|> DiseaseOrPhenotypicFeature : object EntityToDiseaseOrPhenotypicFeatureAssociationMixin : object_specialization_qualifier EntityToDiseaseOrPhenotypicFeatureAssociationMixin : predicate EntityToDiseaseOrPhenotypicFeatureAssociationMixin : subject EntityToDiseaseOrPhenotypicFeatureAssociationMixin --|> NamedThing : subject EntityToDiseaseOrPhenotypicFeatureAssociationMixin : subject_specialization_qualifier

Slots

Name	Cardinality and Range	Inheritance	Examples
subject: connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.	1 NamedThing	direct
predicate: A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes.	1 PredicateType	direct
object: disease or phenotype	1 DiseaseOrPhenotypicFeature	direct	MONDO:0017314, MP:0013229
disease_context_qualifier: A context qualifier representing a disease or condition in which a relationship expressed in an association took place.	0..1 Disease	direct	MONDO:0004979, MONDO:0005148
subject_specialization_qualifier: A qualifier that composes with a core subject/object concept to define a more specific version of the subject concept, specifically using an ontology term that is not a subclass or descendant of the core concept and in the vast majority of cases, is of a different ontological namespace than the category or namespace of the subject identifier.	0..1 Uriorcurie	direct
object_specialization_qualifier: A qualifier that composes with a core subject/object concept to define a more specific version of the subject concept, specifically using an ontology term that is not a subclass or descendant of the core concept and in the vast majority of cases, is of a different ontological namespace than the category or namespace of the subject identifier.	0..1 Uriorcurie	direct
anatomical_context_qualifier: A statement qualifier representing an anatomical location where an relationship expressed in an association took place (can be a tissue, cell type, or sub-cellular location).	0..1 String	direct	blood, cerebral cortext

Mixin Usage

mixed into	description
CellLineToDiseaseOrPhenotypicFeatureAssociation	An relationship between a cell line and a disease or a phenotype, where the cell line is derived from an individual with that disease or phenotype.
ChemicalToDiseaseOrPhenotypicFeatureAssociation	An interaction between a chemical entity and a phenotype or disease, where the presence of the chemical gives rise to or exacerbates the phenotype.
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation	This association defines a relationship between a chemical or treatment (or procedure) and a disease or phenotypic feature where the disease or phenotypic feature is a secondary undesirable effect.
ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation	This association defines a relationship between a chemical or treatment (or procedure) and a disease or phenotypic feature where the disesae or phenotypic feature is a secondary, typically (but not always) undesirable effect.
MaterialSampleToDiseaseOrPhenotypicFeatureAssociation	An association between a material sample and a disease or phenotype.

LinkML Source

name: entity to disease or phenotypic feature association mixin
from_schema: https://w3id.org/biolink/biolink-model
mixin: true
slots:
- subject
- predicate
- object
- disease context qualifier
- subject specialization qualifier
- object specialization qualifier
- anatomical context qualifier
slot_usage:
  object:
    name: object
    description: disease or phenotype
    examples:
    - value: MONDO:0017314
      description: Ehlers-Danlos syndrome, vascular type
    - value: MP:0013229
      description: abnormal brain ventricle size
    range: disease or phenotypic feature
defining_slots:
- subject
- predicate
- object