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Class: EntityToDiseaseAssociationMixin

Description: mixin class for any association whose object (target node) is a disease
classDiagram class EntityToDiseaseAssociationMixin EntityToFeatureOrDiseaseQualifiersMixin <|-- EntityToDiseaseAssociationMixin EntityToDiseaseAssociationMixin <|-- CorrelatedGeneToDiseaseAssociation EntityToDiseaseAssociationMixin <|-- DruggableGeneToDiseaseAssociation EntityToDiseaseAssociationMixin <|-- PhenotypicFeatureToDiseaseAssociation EntityToDiseaseAssociationMixin <|-- VariantToDiseaseAssociation EntityToDiseaseAssociationMixin <|-- GenotypeToDiseaseAssociation EntityToDiseaseAssociationMixin <|-- GeneAsAModelOfDiseaseAssociation EntityToDiseaseAssociationMixin <|-- VariantAsAModelOfDiseaseAssociation EntityToDiseaseAssociationMixin <|-- GenotypeAsAModelOfDiseaseAssociation EntityToDiseaseAssociationMixin <|-- CellLineAsAModelOfDiseaseAssociation EntityToDiseaseAssociationMixin <|-- OrganismalEntityAsAModelOfDiseaseAssociation EntityToDiseaseAssociationMixin : disease_context_qualifier EntityToDiseaseAssociationMixin --|> Disease : disease_context_qualifier EntityToDiseaseAssociationMixin : frequency_qualifier EntityToDiseaseAssociationMixin : object EntityToDiseaseAssociationMixin --|> Disease : object EntityToDiseaseAssociationMixin : object_aspect_qualifier EntityToDiseaseAssociationMixin : object_direction_qualifier EntityToDiseaseAssociationMixin --|> DirectionQualifierEnum : object_direction_qualifier EntityToDiseaseAssociationMixin : predicate EntityToDiseaseAssociationMixin : qualified_predicate EntityToDiseaseAssociationMixin : subject EntityToDiseaseAssociationMixin --|> NamedThing : subject EntityToDiseaseAssociationMixin : subject_aspect_qualifier EntityToDiseaseAssociationMixin : subject_direction_qualifier EntityToDiseaseAssociationMixin --|> DirectionQualifierEnum : subject_direction_qualifier

Inheritance

Slots

Name Cardinality and Range Inheritance Examples
subject_aspect_qualifier:
Composes with the core concept to describe new concepts of a different ontological type. e.g. a process in which the core concept participates, a function/activity/role held by the core concept, or a characteristic/quality that inheres in the core concept. The purpose of the aspect slot is to indicate what aspect is being affected in an 'affects' association. This qualifier specifies a change in the subject of an association (aka: statement).
0..1
String		 EntityToFeatureOrDiseaseQualifiersMixin stability, abundance, expression, exposure
subject_direction_qualifier:
Composes with the core concept (+ aspect if provided) to describe a change in its direction or degree. This qualifier qualifies the subject of an association (aka: statement). 		0..1
DirectionQualifierEnum		 EntityToFeatureOrDiseaseQualifiersMixin
object_aspect_qualifier:
Composes with the core concept to describe new concepts of a different ontological type. e.g. a process in which the core concept participates, a function/activity/role held by the core concept, or a characteristic/quality that inheres in the core concept. The purpose of the aspect slot is to indicate what aspect is being affected in an 'affects' association. This qualifier specifies a change in the object of an association (aka: statement). 		0..1
String		 EntityToFeatureOrDiseaseQualifiersMixin stability, abundance, expression, exposure
object_direction_qualifier:
Composes with the core concept (+ aspect if provided) to describe a change in its direction or degree. This qualifier qualifies the object of an association (aka: statement). 		0..1
DirectionQualifierEnum		 EntityToFeatureOrDiseaseQualifiersMixin
qualified_predicate:
Predicate to be used in an association when subject and object qualifiers are present and the full reading of the statement requires a qualification to the predicate in use in order to refine or increase the specificity of the full statement reading. This qualifier holds a relationship to be used instead of that expressed by the primary predicate, in a ‘full statement’ reading of the association, where qualifier-based semantics are included. This is necessary only in cases where the primary predicate does not work in a full statement reading. 		0..1
String		 EntityToFeatureOrDiseaseQualifiersMixin
disease_context_qualifier:
A context qualifier representing a disease or condition in which a relationship expressed in an association took place. 		0..1
Disease		 EntityToFeatureOrDiseaseQualifiersMixin MONDO:0004979, MONDO:0005148
frequency_qualifier:
a qualifier used in a phenotypic association to state how frequent the phenotype is observed in the subject 		0..1
FrequencyValue		 FrequencyQualifierMixin
subject:
connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object. 		1
NamedThing		 FrequencyQualifierMixin
predicate:
A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes. 		1
PredicateType		 FrequencyQualifierMixin
object:
disease 		1
Disease		 FrequencyQualifierMixin MONDO:0020066

Mixin Usage

mixed into description
CorrelatedGeneToDiseaseAssociation None
DruggableGeneToDiseaseAssociation None
PhenotypicFeatureToDiseaseAssociation None
VariantToDiseaseAssociation None
GenotypeToDiseaseAssociation None
GeneAsAModelOfDiseaseAssociation None
VariantAsAModelOfDiseaseAssociation None
GenotypeAsAModelOfDiseaseAssociation None
CellLineAsAModelOfDiseaseAssociation None
OrganismalEntityAsAModelOfDiseaseAssociation None

LinkML Source

name: entity to disease association mixin
description: mixin class for any association whose object (target node) is a disease
from_schema: https://w3id.org/biolink/biolink-model
is_a: entity to feature or disease qualifiers mixin
mixin: true
slot_usage:
  object:
    name: object
    description: disease
    examples:
    - value: MONDO:0020066
      description: Ehlers-Danlos syndrome
    range: disease
defining_slots:
- object