Class: DrugToGeneInteractionExposure
Description: drug to gene interaction exposure is a drug exposure is where the interactions of the drug with specific genes are known to constitute an 'exposure' to the organism, leading to or influencing an outcome.
classDiagram
class DrugToGeneInteractionExposure
GeneGroupingMixin <|-- DrugToGeneInteractionExposure
DrugExposure <|-- DrugToGeneInteractionExposure
DrugToGeneInteractionExposure : category
DrugToGeneInteractionExposure : deprecated
DrugToGeneInteractionExposure : description
DrugToGeneInteractionExposure : full_name
DrugToGeneInteractionExposure : has_attribute
DrugToGeneInteractionExposure --|> Attribute : has_attribute
DrugToGeneInteractionExposure : has_attribute_type
DrugToGeneInteractionExposure --|> OntologyClass : has_attribute_type
DrugToGeneInteractionExposure : has_gene_or_gene_product
DrugToGeneInteractionExposure --|> Gene : has_gene_or_gene_product
DrugToGeneInteractionExposure : has_qualitative_value
DrugToGeneInteractionExposure --|> NamedThing : has_qualitative_value
DrugToGeneInteractionExposure : has_quantitative_value
DrugToGeneInteractionExposure --|> QuantityValue : has_quantitative_value
DrugToGeneInteractionExposure : id
DrugToGeneInteractionExposure : iri
DrugToGeneInteractionExposure : name
DrugToGeneInteractionExposure : provided_by
DrugToGeneInteractionExposure : synonym
DrugToGeneInteractionExposure : timepoint
DrugToGeneInteractionExposure : type
DrugToGeneInteractionExposure : xref
Inheritance
- Entity
- NamedThing
- Attribute [ OntologyClass]
- ChemicalExposure [ ExposureEvent]
- DrugExposure [ ExposureEvent]
- DrugToGeneInteractionExposure [ GeneGroupingMixin]
- DrugExposure [ ExposureEvent]
- ChemicalExposure [ ExposureEvent]
- Attribute [ OntologyClass]
- NamedThing
Slots
Name | Cardinality and Range | Inheritance | Examples |
---|---|---|---|
has_gene_or_gene_product: connects an entity with one or more gene or gene products |
* Gene |
GeneGroupingMixin | |
timepoint: a point in time |
0..1 TimeType |
ExposureEvent | |
has_quantitative_value: connects an attribute to a value |
* QuantityValue |
ChemicalExposure, Attribute | |
name: The human-readable 'attribute name' can be set to a string which reflects its context of interpretation, e.g. SEPIO evidence/provenance/confidence annotation or it can default to the name associated with the 'has attribute type' slot ontology term. |
0..1 LabelType |
Attribute, Entity | |
has_attribute_type: connects an attribute to a class that describes it |
1 OntologyClass |
Attribute | |
has_qualitative_value: connects an attribute to a value |
0..1 NamedThing |
Attribute | |
iri: An IRI for an entity. This is determined by the id using expansion rules. |
0..1 IriType |
Attribute, Entity | |
id: A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI |
1 String |
OntologyClass, Entity | |
provided_by: The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph. |
* String |
NamedThing | |
xref: A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references. |
* Uriorcurie |
NamedThing | |
full_name: a long-form human readable name for a thing |
0..1 LabelType |
NamedThing | |
synonym: Alternate human-readable names for a thing |
* LabelType |
NamedThing | |
category: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein , biolink:GeneProduct , biolink:MolecularEntity . In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing} |
1..* Uriorcurie |
Entity | |
type: None |
* String |
Entity | |
description: a human-readable description of an entity |
0..1 NarrativeText |
Entity | |
has_attribute: connects any entity to an attribute |
* Attribute |
Entity | |
deprecated: A boolean flag indicating that an entity is no longer considered current or valid. |
0..1 Boolean |
Entity |
LinkML Source
name: drug to gene interaction exposure
description: drug to gene interaction exposure is a drug exposure is where the interactions
of the drug with specific genes are known to constitute an 'exposure' to the organism,
leading to or influencing an outcome.
from_schema: https://w3id.org/biolink/biolink-model
is_a: drug exposure
mixins:
- gene grouping mixin